Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 AC034236.2-201ENST00000606662 1610 ntBASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 MIR3687-2-201ENST00000577708 61 ntBASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 MIR3687-1-201ENST00000614492 61 ntBASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC12.57□□□□□ -0.4
ALMS1Q8TCU4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 TEX21P-204ENST00000641479 1693 ntBASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 INTS4P1-201ENST00000438455 1935 ntBASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 RPS8P6-201ENST00000426177 609 ntBASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 MTDHP3-201ENST00000594186 672 ntBASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 CNN2P11-201ENST00000429351 262 ntBASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 AC009947.1-201ENST00000444350 727 ntBASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
ALMS1Q8TCU4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AL596442.2-201ENST00000610240 980 ntBASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AL162377.1-201ENST00000618844 1793 ntBASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 PAN3-AS1-201ENST00000563843 1351 ntBASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AC106028.4-201ENST00000614509 607 ntBASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 AL138831.2-201ENST00000606564 490 ntBASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ALMS1Q8TCU4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms