Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 AL691403.2-201ENST00000618460 490 ntBASIC12.98□□□□□ -0.33
CSMD3Q7Z407 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 MIR5100-201ENST00000579544 119 ntBASIC12.98□□□□□ -0.33
CSMD3Q7Z407 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 AC116407.3-201ENST00000623905 1129 ntBASIC12.98□□□□□ -0.33
CSMD3Q7Z407 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC12.98□□□□□ -0.33
CSMD3Q7Z407 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 FAM215A-202ENST00000632077 792 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 TEX21P-204ENST00000641479 1693 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AF186996.4-201ENST00000467186 377 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AC096582.2-201ENST00000510860 516 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 MED17-221ENST00000639724 2317 ntTSL 5 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AC020907.5-201ENST00000624372 1936 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AC145285.3-201ENST00000564603 959 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 AC140113.2-201ENST00000604370 208 ntBASIC12.97□□□□□ -0.33
CSMD3Q7Z407 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 PWWP2AP1-201ENST00000429776 2273 ntBASIC12.96□□□□□ -0.33
CSMD3Q7Z407 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 AC125437.2-201ENST00000625180 2167 ntBASIC12.96□□□□□ -0.33
CSMD3Q7Z407 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 FGFR3P6-201ENST00000457012 610 ntBASIC12.96□□□□□ -0.33
CSMD3Q7Z407 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CSMD3Q7Z407 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 LINC01006-201ENST00000333319 2292 ntBASIC12.96□□□□□ -0.34
CSMD3Q7Z407 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.96□□□□□ -0.34
CSMD3Q7Z407 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 HLA-J-202ENST00000469281 1241 ntBASIC12.96□□□□□ -0.34
CSMD3Q7Z407 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 AC134684.3-201ENST00000641758 218 ntBASIC12.96□□□□□ -0.34
CSMD3Q7Z407 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CSMD3Q7Z407 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC12.95□□□□□ -0.34
CSMD3Q7Z407 CLDN5-201ENST00000403084 2357 ntBASIC12.95□□□□□ -0.34
CSMD3Q7Z407 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC12.95□□□□□ -0.34
CSMD3Q7Z407 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CSMD3Q7Z407 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC12.95□□□□□ -0.34
CSMD3Q7Z407 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CSMD3Q7Z407 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CSMD3Q7Z407 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms