Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
KRT39Q6A163 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
KRT39Q6A163 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
KRT39Q6A163 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.15■□□□□ 0.82
KRT39Q6A163 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.15■□□□□ 0.82
KRT39Q6A163 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.15■□□□□ 0.82
KRT39Q6A163 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.15■□□□□ 0.82
KRT39Q6A163 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.15■□□□□ 0.82
KRT39Q6A163 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 LINC01568-207ENST00000641790 1380 ntBASIC20.15■□□□□ 0.82
KRT39Q6A163 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
KRT39Q6A163 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.15■□□□□ 0.82
KRT39Q6A163 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.15■□□□□ 0.82
KRT39Q6A163 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
KRT39Q6A163 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
KRT39Q6A163 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT39Q6A163 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.14■□□□□ 0.82
KRT39Q6A163 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
KRT39Q6A163 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.14■□□□□ 0.82
KRT39Q6A163 AC126763.1-201ENST00000552015 2118 ntBASIC20.14■□□□□ 0.81
KRT39Q6A163 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
KRT39Q6A163 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.14■□□□□ 0.81
KRT39Q6A163 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
KRT39Q6A163 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.14■□□□□ 0.81
KRT39Q6A163 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.14■□□□□ 0.81
KRT39Q6A163 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.14■□□□□ 0.81
KRT39Q6A163 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
KRT39Q6A163 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.14■□□□□ 0.81
KRT39Q6A163 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.14■□□□□ 0.81
KRT39Q6A163 FAM87A-204ENST00000613235 858 ntBASIC20.14■□□□□ 0.81
KRT39Q6A163 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
KRT39Q6A163 AC073592.3-201ENST00000625118 1834 ntBASIC20.13■□□□□ 0.81
KRT39Q6A163 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
KRT39Q6A163 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.13■□□□□ 0.81
KRT39Q6A163 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.13■□□□□ 0.81
KRT39Q6A163 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.13■□□□□ 0.81
KRT39Q6A163 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
KRT39Q6A163 ECEL1P2-202ENST00000465689 757 ntBASIC20.13■□□□□ 0.81
KRT39Q6A163 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.13■□□□□ 0.81
KRT39Q6A163 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.13■□□□□ 0.81
KRT39Q6A163 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.13■□□□□ 0.81
KRT39Q6A163 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
KRT39Q6A163 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.13■□□□□ 0.81
KRT39Q6A163 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.13■□□□□ 0.81
KRT39Q6A163 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.13■□□□□ 0.81
KRT39Q6A163 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
KRT39Q6A163 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
KRT39Q6A163 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.12■□□□□ 0.81
KRT39Q6A163 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.12■□□□□ 0.81
KRT39Q6A163 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
KRT39Q6A163 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 KRT18P22-201ENST00000402024 1347 ntBASIC20.12■□□□□ 0.81
KRT39Q6A163 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.12■□□□□ 0.81
KRT39Q6A163 AC145285.6-201ENST00000604632 637 ntBASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms