Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.95■□□□□ 0.62
USP39Q53GS9 AC246785.2-201ENST00000432512 513 ntBASIC18.95■□□□□ 0.62
USP39Q53GS9 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.95■□□□□ 0.62
USP39Q53GS9 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.95■□□□□ 0.62
USP39Q53GS9 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.95■□□□□ 0.62
USP39Q53GS9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.95■□□□□ 0.62
USP39Q53GS9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
USP39Q53GS9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 AC104417.2-201ENST00000562989 1793 ntBASIC18.94■□□□□ 0.62
USP39Q53GS9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
USP39Q53GS9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.94■□□□□ 0.62
USP39Q53GS9 AL845331.1-201ENST00000424978 1190 ntBASIC18.94■□□□□ 0.62
USP39Q53GS9 FAAHP1-202ENST00000446499 1238 ntBASIC18.94■□□□□ 0.62
USP39Q53GS9 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.94■□□□□ 0.62
USP39Q53GS9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP39Q53GS9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
USP39Q53GS9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.93■□□□□ 0.62
USP39Q53GS9 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.93■□□□□ 0.62
USP39Q53GS9 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
USP39Q53GS9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.93■□□□□ 0.62
USP39Q53GS9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP39Q53GS9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
USP39Q53GS9 GPAT2P1-201ENST00000444924 1672 ntBASIC18.92■□□□□ 0.62
USP39Q53GS9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USP39Q53GS9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.92■□□□□ 0.62
USP39Q53GS9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
USP39Q53GS9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.92■□□□□ 0.62
USP39Q53GS9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.92■□□□□ 0.62
USP39Q53GS9 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
USP39Q53GS9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.92■□□□□ 0.62
USP39Q53GS9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.92■□□□□ 0.62
USP39Q53GS9 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.92■□□□□ 0.62
USP39Q53GS9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms