Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ATP5G1P1-201ENST00000448724 379 ntBASIC18.29■□□□□ 0.52
SHMT2P34897 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHMT2P34897 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.29■□□□□ 0.52
SHMT2P34897 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SHMT2P34897 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
SHMT2P34897 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.29■□□□□ 0.52
SHMT2P34897 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.28■□□□□ 0.52
SHMT2P34897 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.28■□□□□ 0.52
SHMT2P34897 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SHMT2P34897 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SHMT2P34897 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 TERF1P1-201ENST00000311003 1181 ntBASIC18.28■□□□□ 0.52
SHMT2P34897 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
SHMT2P34897 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.28■□□□□ 0.52
SHMT2P34897 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.28■□□□□ 0.52
SHMT2P34897 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.28■□□□□ 0.52
SHMT2P34897 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SHMT2P34897 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.28■□□□□ 0.52
SHMT2P34897 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 AC104581.1-202ENST00000635932 2618 ntBASIC18.28■□□□□ 0.52
SHMT2P34897 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
SHMT2P34897 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.28■□□□□ 0.52
SHMT2P34897 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHMT2P34897 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SHMT2P34897 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHMT2P34897 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHMT2P34897 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.27■□□□□ 0.52
SHMT2P34897 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHMT2P34897 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHMT2P34897 AC005521.1-201ENST00000393351 872 ntBASIC18.27■□□□□ 0.52
SHMT2P34897 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.52
SHMT2P34897 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.27■□□□□ 0.52
SHMT2P34897 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.52
SHMT2P34897 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 AC008622.2-201ENST00000617006 1229 ntBASIC18.27■□□□□ 0.52
SHMT2P34897 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.27■□□□□ 0.52
SHMT2P34897 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHMT2P34897 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SHMT2P34897 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHMT2P34897 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHMT2P34897 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHMT2P34897 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
SHMT2P34897 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHMT2P34897 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHMT2P34897 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.26■□□□□ 0.51
SHMT2P34897 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.26■□□□□ 0.51
SHMT2P34897 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
SHMT2P34897 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SHMT2P34897 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
SHMT2P34897 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHMT2P34897 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.26■□□□□ 0.51
SHMT2P34897 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.26■□□□□ 0.51
SHMT2P34897 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 AC092865.7-201ENST00000641832 219 ntBASIC18.26■□□□□ 0.51
SHMT2P34897 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.26■□□□□ 0.51
SHMT2P34897 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.26■□□□□ 0.51
SHMT2P34897 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms