Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.29■□□□□ 0.2
COL8A1P27658 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 RPSAP43-201ENST00000402237 625 ntBASIC16.28■□□□□ 0.2
COL8A1P27658 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.28■□□□□ 0.2
COL8A1P27658 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 AC116407.3-201ENST00000623905 1129 ntBASIC16.28■□□□□ 0.2
COL8A1P27658 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL8A1P27658 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL8A1P27658 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL8A1P27658 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.27■□□□□ 0.2
COL8A1P27658 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 AP001271.2-201ENST00000624018 1556 ntBASIC16.27■□□□□ 0.2
COL8A1P27658 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.27■□□□□ 0.2
COL8A1P27658 SCARNA2-201ENST00000458748 420 ntBASIC16.27■□□□□ 0.2
COL8A1P27658 AC112482.1-201ENST00000492080 688 ntBASIC16.27■□□□□ 0.2
COL8A1P27658 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.27■□□□□ 0.2
COL8A1P27658 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.27■□□□□ 0.2
COL8A1P27658 AL356488.2-201ENST00000602755 427 ntBASIC16.27■□□□□ 0.2
COL8A1P27658 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL8A1P27658 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.27■□□□□ 0.2
COL8A1P27658 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.27■□□□□ 0.2
COL8A1P27658 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 FEM1AP4-201ENST00000443167 1987 ntBASIC16.27■□□□□ 0.19
COL8A1P27658 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.27■□□□□ 0.19
COL8A1P27658 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.27■□□□□ 0.19
COL8A1P27658 AC006128.1-201ENST00000624704 1661 ntBASIC16.27■□□□□ 0.19
COL8A1P27658 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.27■□□□□ 0.19
COL8A1P27658 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL8A1P27658 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
COL8A1P27658 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.26■□□□□ 0.19
COL8A1P27658 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL8A1P27658 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.26■□□□□ 0.19
COL8A1P27658 MCCD1P1-208ENST00000445732 328 ntBASIC16.26■□□□□ 0.19
COL8A1P27658 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL8A1P27658 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.26■□□□□ 0.19
COL8A1P27658 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.26■□□□□ 0.19
COL8A1P27658 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.26■□□□□ 0.19
COL8A1P27658 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.26■□□□□ 0.19
COL8A1P27658 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 AL591684.3-201ENST00000605187 298 ntBASIC16.26■□□□□ 0.19
COL8A1P27658 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.26■□□□□ 0.19
COL8A1P27658 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.26■□□□□ 0.19
COL8A1P27658 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL8A1P27658 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL8A1P27658 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL8A1P27658 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
COL8A1P27658 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.26■□□□□ 0.19
COL8A1P27658 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms