Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
NEK1Q96PY6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.16■■□□□ 1.14
NEK1Q96PY6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 AL353719.1-201ENST00000566847 864 ntBASIC22.15■■□□□ 1.14
NEK1Q96PY6 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC22.15■■□□□ 1.14
NEK1Q96PY6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NEK1Q96PY6 NEFHP1-201ENST00000412845 2629 ntBASIC22.14■■□□□ 1.14
NEK1Q96PY6 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
NEK1Q96PY6 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
NEK1Q96PY6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
NEK1Q96PY6 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 TSPY17P-201ENST00000450329 467 ntBASIC22.14■■□□□ 1.13
NEK1Q96PY6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
NEK1Q96PY6 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC22.14■■□□□ 1.13
NEK1Q96PY6 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 MIR564-202ENST00000385049 94 ntBASIC22.13■■□□□ 1.13
NEK1Q96PY6 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 AP003041.3-201ENST00000527151 707 ntBASIC22.13■■□□□ 1.13
NEK1Q96PY6 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 KRT8P45-201ENST00000414328 1447 ntBASIC22.13■■□□□ 1.13
NEK1Q96PY6 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC22.13■■□□□ 1.13
NEK1Q96PY6 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NEK1Q96PY6 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NEK1Q96PY6 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
NEK1Q96PY6 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
NEK1Q96PY6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
NEK1Q96PY6 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms