Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 EMBP1-201ENST00000458200 901 ntBASIC19.04■□□□□ 0.64
CHFRQ96EP1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 AC104692.2-201ENST00000603054 253 ntBASIC19.04■□□□□ 0.64
CHFRQ96EP1 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.03■□□□□ 0.64
CHFRQ96EP1 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.03■□□□□ 0.64
CHFRQ96EP1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
CHFRQ96EP1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 AC004870.1-201ENST00000315132 882 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.03■□□□□ 0.64
CHFRQ96EP1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 LINC00265-3P-201ENST00000447588 903 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CHFRQ96EP1 AC009078.2-202ENST00000463353 338 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 TOB2P1-201ENST00000469761 992 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 AP000867.3-201ENST00000524675 377 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 AC005332.3-201ENST00000589904 676 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 AL390719.2-201ENST00000606993 987 ntBASIC19.03■□□□□ 0.64
CHFRQ96EP1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHFRQ96EP1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 KRT8P10-201ENST00000450021 1447 ntBASIC19.02■□□□□ 0.64
CHFRQ96EP1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 AL031008.1-201ENST00000619963 541 ntBASIC19.02■□□□□ 0.64
CHFRQ96EP1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CHFRQ96EP1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHFRQ96EP1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CHFRQ96EP1 AC006333.2-201ENST00000607957 2099 ntBASIC19.02■□□□□ 0.63
CHFRQ96EP1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.02■□□□□ 0.63
CHFRQ96EP1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHFRQ96EP1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHFRQ96EP1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms