Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 MED22-202ENST00000371999 987 ntTSL 3 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 PMS2P1-201ENST00000431037 1228 ntBASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 AC018712.1-201ENST00000455767 687 ntBASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 AC090616.6-201ENST00000582640 721 ntBASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 NFYC-AS1-201ENST00000606277 1687 ntBASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 AC124864.1-201ENST00000623408 392 ntBASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 LINC01521-201ENST00000504184 1943 ntBASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
VPS13DQ5THJ4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 CD63-204ENST00000546939 779 ntTSL 3 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 FGFR3P6-201ENST00000457012 610 ntBASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 AC009065.1-201ENST00000564055 1225 ntBASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13DQ5THJ4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 SART3-203ENST00000546611 1184 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AL773604.1-201ENST00000617417 272 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 FAM215A-202ENST00000632077 792 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC092865.5-201ENST00000545435 363 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms