Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC211486.1-202ENST00000416371 468 ntBASIC13.38□□□□□ -0.27
COL7A1Q02388 METTL21AP1-201ENST00000438852 635 ntBASIC13.38□□□□□ -0.27
COL7A1Q02388 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.38□□□□□ -0.27
COL7A1Q02388 AC211476.1-201ENST00000503899 468 ntBASIC13.38□□□□□ -0.27
COL7A1Q02388 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.38□□□□□ -0.27
COL7A1Q02388 AL356488.2-201ENST00000602755 427 ntBASIC13.38□□□□□ -0.27
COL7A1Q02388 AP001269.4-201ENST00000609611 512 ntBASIC13.38□□□□□ -0.27
COL7A1Q02388 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 KRT8P3-201ENST00000519669 1449 ntBASIC13.38□□□□□ -0.27
COL7A1Q02388 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL7A1Q02388 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AL591684.3-201ENST00000605187 298 ntBASIC13.37□□□□□ -0.27
COL7A1Q02388 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
COL7A1Q02388 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.37□□□□□ -0.27
COL7A1Q02388 NUS1P2-201ENST00000417358 873 ntBASIC13.37□□□□□ -0.27
COL7A1Q02388 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AC093909.1-201ENST00000504731 1122 ntBASIC13.37□□□□□ -0.27
COL7A1Q02388 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.37□□□□□ -0.27
COL7A1Q02388 SART3-203ENST00000546611 1184 ntBASIC13.37□□□□□ -0.27
COL7A1Q02388 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.37□□□□□ -0.27
COL7A1Q02388 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.37□□□□□ -0.27
COL7A1Q02388 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL7A1Q02388 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 FAM215A-202ENST00000632077 792 ntBASIC13.37□□□□□ -0.27
COL7A1Q02388 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC13.37□□□□□ -0.27
COL7A1Q02388 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL7A1Q02388 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC13.37□□□□□ -0.27
COL7A1Q02388 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 FAM8A3P-201ENST00000427218 844 ntBASIC13.36□□□□□ -0.27
COL7A1Q02388 AP006288.1-201ENST00000446065 395 ntBASIC13.36□□□□□ -0.27
COL7A1Q02388 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 AC005336.2-201ENST00000593183 939 ntBASIC13.36□□□□□ -0.27
COL7A1Q02388 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.36□□□□□ -0.27
COL7A1Q02388 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.36□□□□□ -0.27
COL7A1Q02388 AC132008.2-207ENST00000454517 770 ntBASIC13.36□□□□□ -0.27
COL7A1Q02388 GUSBP12-201ENST00000513727 720 ntBASIC13.36□□□□□ -0.27
COL7A1Q02388 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC13.36□□□□□ -0.27
COL7A1Q02388 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
COL7A1Q02388 GAS2L1P1-201ENST00000420145 1480 ntBASIC13.36□□□□□ -0.27
COL7A1Q02388 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.36□□□□□ -0.27
COL7A1Q02388 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.36□□□□□ -0.27
COL7A1Q02388 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.36□□□□□ -0.27
COL7A1Q02388 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.36□□□□□ -0.27
COL7A1Q02388 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC13.36□□□□□ -0.27
COL7A1Q02388 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL7A1Q02388 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
COL7A1Q02388 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
COL7A1Q02388 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC13.35□□□□□ -0.27
COL7A1Q02388 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 AL109659.2-201ENST00000606809 1674 ntBASIC13.35□□□□□ -0.27
COL7A1Q02388 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms