Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AP001271.2-201ENST00000624018 1556 ntBASIC18.48■□□□□ 0.55
LIMK1P53667 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIMK1P53667 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.48■□□□□ 0.55
LIMK1P53667 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
LIMK1P53667 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.48■□□□□ 0.55
LIMK1P53667 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIMK1P53667 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMK1P53667 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.48■□□□□ 0.55
LIMK1P53667 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMK1P53667 AC092865.5-201ENST00000545435 363 ntBASIC18.48■□□□□ 0.55
LIMK1P53667 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.48■□□□□ 0.55
LIMK1P53667 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.48■□□□□ 0.55
LIMK1P53667 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.48■□□□□ 0.55
LIMK1P53667 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMK1P53667 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMK1P53667 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LIMK1P53667 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LIMK1P53667 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 SAPCD2P3-201ENST00000455031 850 ntBASIC18.47■□□□□ 0.55
LIMK1P53667 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
LIMK1P53667 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.47■□□□□ 0.55
LIMK1P53667 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 AC090616.6-201ENST00000582640 721 ntBASIC18.47■□□□□ 0.55
LIMK1P53667 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.47■□□□□ 0.55
LIMK1P53667 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LIMK1P53667 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.47■□□□□ 0.55
LIMK1P53667 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LIMK1P53667 TCF3P1-201ENST00000423021 1937 ntBASIC18.47■□□□□ 0.55
LIMK1P53667 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
LIMK1P53667 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMK1P53667 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
LIMK1P53667 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
LIMK1P53667 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMK1P53667 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LIMK1P53667 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMK1P53667 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
LIMK1P53667 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
LIMK1P53667 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.46■□□□□ 0.55
LIMK1P53667 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMK1P53667 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMK1P53667 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.46■□□□□ 0.55
LIMK1P53667 RNA5SP419-201ENST00000515908 135 ntBASIC18.46■□□□□ 0.55
LIMK1P53667 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LIMK1P53667 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.46■□□□□ 0.55
LIMK1P53667 AC138894.3-201ENST00000603787 634 ntBASIC18.46■□□□□ 0.55
LIMK1P53667 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMK1P53667 AL391807.1-203ENST00000604392 2365 ntBASIC18.46■□□□□ 0.55
LIMK1P53667 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMK1P53667 FP700111.2-201ENST00000619190 1892 ntBASIC18.46■□□□□ 0.54
LIMK1P53667 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 TNXA-203ENST00000507684 2038 ntBASIC18.45■□□□□ 0.54
LIMK1P53667 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LIMK1P53667 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
LIMK1P53667 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.45■□□□□ 0.54
LIMK1P53667 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 AKR1C7P-201ENST00000305623 895 ntBASIC18.45■□□□□ 0.54
LIMK1P53667 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LIMK1P53667 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.45■□□□□ 0.54
LIMK1P53667 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms