Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL773604.1-201ENST00000617417 272 ntBASIC17.96■□□□□ 0.47
COL5A1P20908 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
COL5A1P20908 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A1P20908 AFG3L1P-217ENST00000557444 2447 ntBASIC17.96■□□□□ 0.47
COL5A1P20908 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A1P20908 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A1P20908 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.96■□□□□ 0.47
COL5A1P20908 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A1P20908 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL5A1P20908 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 PMS2P1-201ENST00000431037 1228 ntBASIC17.95■□□□□ 0.46
COL5A1P20908 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.95■□□□□ 0.46
COL5A1P20908 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.95■□□□□ 0.46
COL5A1P20908 AP001005.1-201ENST00000571755 1248 ntBASIC17.95■□□□□ 0.46
COL5A1P20908 AC024563.2-201ENST00000603282 481 ntBASIC17.95■□□□□ 0.46
COL5A1P20908 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.95■□□□□ 0.46
COL5A1P20908 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.95■□□□□ 0.46
COL5A1P20908 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 GUSBP12-201ENST00000513727 720 ntBASIC17.95■□□□□ 0.46
COL5A1P20908 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 AP005901.3-202ENST00000581653 237 ntBASIC17.95■□□□□ 0.46
COL5A1P20908 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A1P20908 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL5A1P20908 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A1P20908 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.94■□□□□ 0.46
COL5A1P20908 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.94■□□□□ 0.46
COL5A1P20908 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
COL5A1P20908 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL5A1P20908 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
COL5A1P20908 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.94■□□□□ 0.46
COL5A1P20908 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.94■□□□□ 0.46
COL5A1P20908 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL5A1P20908 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.94■□□□□ 0.46
COL5A1P20908 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.94■□□□□ 0.46
COL5A1P20908 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.94■□□□□ 0.46
COL5A1P20908 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.94■□□□□ 0.46
COL5A1P20908 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A1P20908 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.93■□□□□ 0.46
COL5A1P20908 AC005332.3-201ENST00000589904 676 ntBASIC17.93■□□□□ 0.46
COL5A1P20908 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.93■□□□□ 0.46
COL5A1P20908 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL5A1P20908 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.93■□□□□ 0.46
COL5A1P20908 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 NUS1P2-201ENST00000417358 873 ntBASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms