Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.29■□□□□ 0.52
SDC3O75056 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.29■□□□□ 0.52
SDC3O75056 TSPY22P-201ENST00000427496 604 ntBASIC18.29■□□□□ 0.52
SDC3O75056 KRT8P26-201ENST00000534154 1276 ntBASIC18.29■□□□□ 0.52
SDC3O75056 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
SDC3O75056 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
SDC3O75056 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
SDC3O75056 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SDC3O75056 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SDC3O75056 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.29■□□□□ 0.52
SDC3O75056 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 KRT18P1-202ENST00000452408 1331 ntBASIC18.28■□□□□ 0.52
SDC3O75056 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.28■□□□□ 0.52
SDC3O75056 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SDC3O75056 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.28■□□□□ 0.52
SDC3O75056 AC246785.2-201ENST00000432512 513 ntBASIC18.28■□□□□ 0.52
SDC3O75056 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.28■□□□□ 0.52
SDC3O75056 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.28■□□□□ 0.52
SDC3O75056 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.28■□□□□ 0.52
SDC3O75056 RNF126P1-202ENST00000569893 925 ntBASIC18.28■□□□□ 0.52
SDC3O75056 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 RN7SL510P-201ENST00000581311 263 ntBASIC18.28■□□□□ 0.52
SDC3O75056 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 AC093525.10-201ENST00000625130 1569 ntBASIC18.28■□□□□ 0.52
SDC3O75056 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.28■□□□□ 0.52
SDC3O75056 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SDC3O75056 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.28■□□□□ 0.52
SDC3O75056 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SDC3O75056 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.28■□□□□ 0.52
SDC3O75056 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDC3O75056 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.27■□□□□ 0.52
SDC3O75056 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.27■□□□□ 0.52
SDC3O75056 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SDC3O75056 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
SDC3O75056 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.27■□□□□ 0.52
SDC3O75056 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.27■□□□□ 0.52
SDC3O75056 AL845331.1-201ENST00000424978 1190 ntBASIC18.27■□□□□ 0.52
SDC3O75056 CHCHD2P8-201ENST00000429873 447 ntBASIC18.27■□□□□ 0.52
SDC3O75056 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.27■□□□□ 0.52
SDC3O75056 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.27■□□□□ 0.52
SDC3O75056 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.27■□□□□ 0.52
SDC3O75056 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.27■□□□□ 0.52
SDC3O75056 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.27■□□□□ 0.52
SDC3O75056 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SDC3O75056 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SDC3O75056 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.27■□□□□ 0.51
SDC3O75056 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
SDC3O75056 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SDC3O75056 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SDC3O75056 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SDC3O75056 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SDC3O75056 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 MIR662-201ENST00000384847 95 ntBASIC18.26■□□□□ 0.51
SDC3O75056 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.26■□□□□ 0.51
SDC3O75056 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.26■□□□□ 0.51
SDC3O75056 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.26■□□□□ 0.51
SDC3O75056 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.26■□□□□ 0.51
SDC3O75056 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SDC3O75056 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.26■□□□□ 0.51
SDC3O75056 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 AC010240.3-201ENST00000607688 395 ntBASIC18.26■□□□□ 0.51
SDC3O75056 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.26■□□□□ 0.51
SDC3O75056 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SDC3O75056 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDC3O75056 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms