Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SHOX2O60902 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SHOX2O60902 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 MCRIP2P1-201ENST00000394346 511 ntBASIC18.75■□□□□ 0.59
SHOX2O60902 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.75■□□□□ 0.59
SHOX2O60902 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.75■□□□□ 0.59
SHOX2O60902 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.75■□□□□ 0.59
SHOX2O60902 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.75■□□□□ 0.59
SHOX2O60902 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.74■□□□□ 0.59
SHOX2O60902 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.74■□□□□ 0.59
SHOX2O60902 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 AC008556.1-201ENST00000610908 2040 ntBASIC18.74■□□□□ 0.59
SHOX2O60902 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
SHOX2O60902 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
SHOX2O60902 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 AC004854.2-201ENST00000608450 1441 ntBASIC18.74■□□□□ 0.59
SHOX2O60902 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHOX2O60902 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SHOX2O60902 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SHOX2O60902 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.73■□□□□ 0.59
SHOX2O60902 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHOX2O60902 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.73■□□□□ 0.59
SHOX2O60902 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
SHOX2O60902 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.73■□□□□ 0.59
SHOX2O60902 AL162412.1-201ENST00000567129 965 ntBASIC18.73■□□□□ 0.59
SHOX2O60902 TERF1P2-201ENST00000583350 1212 ntBASIC18.73■□□□□ 0.59
SHOX2O60902 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.73■□□□□ 0.59
SHOX2O60902 AC100791.3-201ENST00000617619 330 ntBASIC18.73■□□□□ 0.59
SHOX2O60902 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.73■□□□□ 0.59
SHOX2O60902 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
SHOX2O60902 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SHOX2O60902 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.73■□□□□ 0.59
SHOX2O60902 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHOX2O60902 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms