Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 AC138932.1-201ENST00000534164 6830 ntBASIC18.81■□□□□ 0.6
DKK3Q9UBP4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.81■□□□□ 0.6
DKK3Q9UBP4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 AC092647.4-201ENST00000457211 535 ntBASIC18.81■□□□□ 0.6
DKK3Q9UBP4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 GCSHP2-201ENST00000560971 527 ntBASIC18.81■□□□□ 0.6
DKK3Q9UBP4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 NTF6B-201ENST00000591913 560 ntBASIC18.81■□□□□ 0.6
DKK3Q9UBP4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DKK3Q9UBP4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 HEIH-201ENST00000623091 1652 ntBASIC18.8■□□□□ 0.6
DKK3Q9UBP4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.8■□□□□ 0.6
DKK3Q9UBP4 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.8■□□□□ 0.6
DKK3Q9UBP4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 HOXB1-202ENST00000577092 1414 ntBASIC18.8■□□□□ 0.6
DKK3Q9UBP4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
DKK3Q9UBP4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
DKK3Q9UBP4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms