Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 AC092597.1-201ENST00000487352 616 ntBASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 AC112497.1-201ENST00000624824 639 ntBASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 AL109659.2-201ENST00000606809 1674 ntBASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 AC008556.1-201ENST00000610908 2040 ntBASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 HBZP1-201ENST00000354915 429 ntBASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.81■□□□□ 0.6
HDDC3Q8N4P3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AC141586.3-201ENST00000562166 1838 ntBASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AC004870.1-201ENST00000315132 882 ntBASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 SEC1P-202ENST00000473944 940 ntBASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AC111152.3-201ENST00000569699 673 ntBASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AC092119.3-201ENST00000612618 583 ntBASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
HDDC3Q8N4P3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 FP475955.4-201ENST00000623131 1990 ntBASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 AC092329.2-201ENST00000598402 547 ntBASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDDC3Q8N4P3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms