Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 KRT18P67-201ENST00000432816 1264 ntBASIC23.59■■□□□ 1.37
RC3H1Q5TC82 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 MIR5100-201ENST00000579544 119 ntBASIC23.59■■□□□ 1.37
RC3H1Q5TC82 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 BNIP3P18-201ENST00000593976 575 ntBASIC23.59■■□□□ 1.37
RC3H1Q5TC82 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.59■■□□□ 1.37
RC3H1Q5TC82 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 MED22-202ENST00000371999 987 ntTSL 3 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 HES2-202ENST00000377836 507 ntTSL 2 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 AL031284.1-201ENST00000419297 478 ntBASIC23.58■■□□□ 1.37
RC3H1Q5TC82 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 SLC25A1P1-201ENST00000528351 927 ntBASIC23.58■■□□□ 1.37
RC3H1Q5TC82 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
RC3H1Q5TC82 AC068587.9-201ENST00000641814 219 ntBASIC23.58■■□□□ 1.37
RC3H1Q5TC82 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.58■■□□□ 1.36
RC3H1Q5TC82 TREX1-205ENST00000625293 1783 ntBASIC23.57■■□□□ 1.36
RC3H1Q5TC82 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 AL591684.3-201ENST00000605187 298 ntBASIC23.57■■□□□ 1.36
RC3H1Q5TC82 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC23.57■■□□□ 1.36
RC3H1Q5TC82 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 CCS-201ENST00000310190 942 ntTSL 5 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 KRT18P13-201ENST00000400056 1290 ntBASIC23.56■■□□□ 1.36
RC3H1Q5TC82 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.56■■□□□ 1.36
RC3H1Q5TC82 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.55■■□□□ 1.36
RC3H1Q5TC82 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms