Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
PRKDCP78527 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.54□□□□□ -0.24
PRKDCP78527 AC021087.4-201ENST00000563761 564 ntBASIC13.54□□□□□ -0.24
PRKDCP78527 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 ANKRD18DP-204ENST00000455355 1975 ntBASIC13.54□□□□□ -0.24
PRKDCP78527 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
PRKDCP78527 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
PRKDCP78527 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 AC007225.1-201ENST00000566331 1836 ntBASIC13.53□□□□□ -0.24
PRKDCP78527 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.53□□□□□ -0.24
PRKDCP78527 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.53□□□□□ -0.24
PRKDCP78527 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.53□□□□□ -0.24
PRKDCP78527 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 KRT8P3-201ENST00000519669 1449 ntBASIC13.53□□□□□ -0.24
PRKDCP78527 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.53□□□□□ -0.24
PRKDCP78527 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.53□□□□□ -0.24
PRKDCP78527 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 AC005498.2-205ENST00000593218 784 ntBASIC13.53□□□□□ -0.24
PRKDCP78527 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.53□□□□□ -0.24
PRKDCP78527 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 AL049796.1-201ENST00000565336 1766 ntBASIC13.53□□□□□ -0.24
PRKDCP78527 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
PRKDCP78527 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.53□□□□□ -0.24
PRKDCP78527 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.53□□□□□ -0.24
PRKDCP78527 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
PRKDCP78527 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
PRKDCP78527 AC087641.1-201ENST00000557561 1021 ntBASIC13.52□□□□□ -0.24
PRKDCP78527 SNHG9-202ENST00000564014 471 ntBASIC13.52□□□□□ -0.24
PRKDCP78527 AL031432.2-201ENST00000566714 459 ntBASIC13.52□□□□□ -0.24
PRKDCP78527 AL928711.1-201ENST00000570165 459 ntBASIC13.52□□□□□ -0.24
PRKDCP78527 AP002472.1-201ENST00000577490 586 ntBASIC13.52□□□□□ -0.24
PRKDCP78527 Z92544.3-201ENST00000624747 417 ntBASIC13.52□□□□□ -0.24
PRKDCP78527 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC13.52□□□□□ -0.24
PRKDCP78527 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
PRKDCP78527 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 AC254562.1-201ENST00000417586 456 ntBASIC13.52□□□□□ -0.25
PRKDCP78527 AC092910.1-201ENST00000482027 1129 ntBASIC13.52□□□□□ -0.25
PRKDCP78527 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.52□□□□□ -0.25
PRKDCP78527 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.52□□□□□ -0.25
PRKDCP78527 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.52□□□□□ -0.25
PRKDCP78527 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
PRKDCP78527 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 AC002310.6-201ENST00000624451 1377 ntBASIC13.52□□□□□ -0.25
PRKDCP78527 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PRKDCP78527 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
PRKDCP78527 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.52□□□□□ -0.25
PRKDCP78527 RNA5SP416-201ENST00000516838 111 ntBASIC13.52□□□□□ -0.25
PRKDCP78527 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.52□□□□□ -0.25
PRKDCP78527 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
PRKDCP78527 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
PRKDCP78527 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
PRKDCP78527 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.51□□□□□ -0.25
PRKDCP78527 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.51□□□□□ -0.25
PRKDCP78527 AC092865.6-201ENST00000642101 219 ntBASIC13.51□□□□□ -0.25
PRKDCP78527 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC13.51□□□□□ -0.25
PRKDCP78527 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms