Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 AC034236.2-201ENST00000606662 1610 ntBASIC21.65■■□□□ 1.06
HMGCS2P54868 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGCS2P54868 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS2P54868 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS2P54868 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
HMGCS2P54868 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.64■■□□□ 1.06
HMGCS2P54868 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS2P54868 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGCS2P54868 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.64■■□□□ 1.05
HMGCS2P54868 AC104819.1-201ENST00000504587 486 ntBASIC21.64■■□□□ 1.05
HMGCS2P54868 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
HMGCS2P54868 AC090616.6-201ENST00000582640 721 ntBASIC21.64■■□□□ 1.05
HMGCS2P54868 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 IGHV3-41-201ENST00000613121 348 ntBASIC21.64■■□□□ 1.05
HMGCS2P54868 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGCS2P54868 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
HMGCS2P54868 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGCS2P54868 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGCS2P54868 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS2P54868 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGCS2P54868 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
HMGCS2P54868 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGCS2P54868 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGCS2P54868 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGCS2P54868 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGCS2P54868 AC079781.3-201ENST00000449110 356 ntBASIC21.63■■□□□ 1.05
HMGCS2P54868 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.63■■□□□ 1.05
HMGCS2P54868 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGCS2P54868 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGCS2P54868 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGCS2P54868 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 AC104692.2-201ENST00000603054 253 ntBASIC21.63■■□□□ 1.05
HMGCS2P54868 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
HMGCS2P54868 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
HMGCS2P54868 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGCS2P54868 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
HMGCS2P54868 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS2P54868 LINC00167-201ENST00000530583 1419 ntBASIC21.63■■□□□ 1.05
HMGCS2P54868 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
HMGCS2P54868 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGCS2P54868 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGCS2P54868 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
HMGCS2P54868 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGCS2P54868 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGCS2P54868 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
HMGCS2P54868 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS2P54868 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 AC074051.2-201ENST00000565115 352 ntBASIC21.62■■□□□ 1.05
HMGCS2P54868 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS2P54868 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.62■■□□□ 1.05
HMGCS2P54868 AC138894.3-201ENST00000603787 634 ntBASIC21.62■■□□□ 1.05
HMGCS2P54868 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS2P54868 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
HMGCS2P54868 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS2P54868 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.61■■□□□ 1.05
HMGCS2P54868 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
HMGCS2P54868 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGCS2P54868 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
HMGCS2P54868 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.61■■□□□ 1.05
HMGCS2P54868 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
HMGCS2P54868 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms