Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SIGIRR-216ENST00000528845 573 ntTSL 224.54■■□□□ 1.521e-8■■□□□ 13.8
YBX3P16989 SIGIRR-209ENST00000527295 1867 ntTSL 223.54■■□□□ 1.361e-8■■□□□ 13.8
YBX3P16989 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.161e-8■■□□□ 13.8
YBX3P16989 SIGIRR-206ENST00000526395 608 ntTSL 221.87■■□□□ 1.091e-8■■□□□ 13.8
YBX3P16989 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.041e-8■■□□□ 13.8
YBX3P16989 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.871e-8■■□□□ 13.8
YBX3P16989 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.151e-6■■□□□ 13.8
YBX3P16989 MARS-224ENST00000551805 479 ntTSL 25.25□□□□□ -1.577e-13■■□□□ 13.8
YBX3P16989 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.44■□□□□ 0.541e-12■■□□□ 13.8
YBX3P16989 GRHPR-203ENST00000460882 1080 ntTSL 1 (best)21.49■■□□□ 1.031e-7■■□□□ 13.8
YBX3P16989 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 11e-7■■□□□ 13.8
YBX3P16989 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC32.18■■■□□ 2.742e-6■■□□□ 13.8
YBX3P16989 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.191e-7■■□□□ 13.8
YBX3P16989 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.58■□□□□ 0.091e-7■■□□□ 13.8
YBX3P16989 ATP2A3-203ENST00000359983 3290 ntTSL 5 BASIC12.98□□□□□ -0.331e-7■■□□□ 13.8
YBX3P16989 ERAL1-202ENST00000412138 1039 ntTSL 516.82■□□□□ 0.281e-6■■□□□ 13.8
YBX3P16989 ORC1-202ENST00000371568 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.565e-9■■□□□ 13.8
YBX3P16989 ORC1-201ENST00000371566 3080 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.715e-9■■□□□ 13.8
YBX3P16989 HDLBP-237ENST00000479169 1017 ntTSL 215.5■□□□□ 0.072e-8■■□□□ 13.8
YBX3P16989 HDLBP-215ENST00000427487 924 ntTSL 514.61□□□□□ -0.072e-8■■□□□ 13.8
YBX3P16989 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.47■□□□□ 0.875e-7■■□□□ 13.8
YBX3P16989 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.34■□□□□ 0.535e-7■■□□□ 13.8
YBX3P16989 DNM1L-223ENST00000550093 570 ntTSL 212.26□□□□□ -0.459e-7■■□□□ 13.8
YBX3P16989 DNM1L-228ENST00000552743 606 ntTSL 410.32□□□□□ -0.769e-7■■□□□ 13.8
YBX3P16989 DNM1L-216ENST00000548151 557 ntTSL 49.71□□□□□ -0.869e-7■■□□□ 13.8
YBX3P16989 DNM1L-209ENST00000546757 2661 ntTSL 58.68□□□□□ -1.029e-7■■□□□ 13.8
YBX3P16989 DNM1L-210ENST00000547078 450 ntTSL 44.18□□□□□ -1.749e-7■■□□□ 13.8
YBX3P16989 STK40-206ENST00000460417 681 ntTSL 219.03■□□□□ 0.647e-7■■□□□ 13.8
YBX3P16989 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.928e-14■■□□□ 13.8
YBX3P16989 SLC2A3-205ENST00000486749 4414 ntTSL 1 (best)8.74□□□□□ -1.018e-14■■□□□ 13.8
YBX3P16989 MED24-213ENST00000535071 2441 ntTSL 516■□□□□ 0.157e-7■■□□□ 13.8
YBX3P16989 MED24-214ENST00000535508 3334 ntTSL 212.78□□□□□ -0.367e-7■■□□□ 13.8
YBX3P16989 MED24-212ENST00000501516 3037 ntTSL 5 BASIC12.78□□□□□ -0.367e-7■■□□□ 13.8
YBX3P16989 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.387e-7■■□□□ 13.8
YBX3P16989 MED24-203ENST00000394127 3456 ntTSL 2 BASIC12.25□□□□□ -0.457e-7■■□□□ 13.8
YBX3P16989 MED24-201ENST00000356271 3446 ntTSL 2 BASIC12.12□□□□□ -0.477e-7■■□□□ 13.8
YBX3P16989 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC11.86□□□□□ -0.517e-7■■□□□ 13.8
YBX3P16989 MED24-202ENST00000394126 3896 ntTSL 1 (best) BASIC11.39□□□□□ -0.597e-7■■□□□ 13.8
YBX3P16989 LONP2-201ENST00000285737 8199 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.661e-6■■□□□ 13.8
YBX3P16989 NCSTN-212ENST00000469159 856 ntTSL 211.86□□□□□ -0.513e-6■■□□□ 13.8
YBX3P16989 HADH-210ENST00000626637 1774 ntTSL 2 BASIC13.1□□□□□ -0.312e-6■■□□□ 13.7
YBX3P16989 HADH-219ENST00000640048 1670 ntTSL 511.93□□□□□ -0.52e-6■■□□□ 13.7
YBX3P16989 HADH-213ENST00000638648 1910 ntTSL 211.68□□□□□ -0.542e-6■■□□□ 13.7
YBX3P16989 HADH-217ENST00000639698 1507 ntTSL 511.1□□□□□ -0.632e-6■■□□□ 13.7
YBX3P16989 HADH-218ENST00000639784 1355 ntTSL 511.08□□□□□ -0.642e-6■■□□□ 13.7
YBX3P16989 HADH-222ENST00000640586 3308 ntTSL 59.8□□□□□ -0.842e-6■■□□□ 13.7
YBX3P16989 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC10.42□□□□□ -0.747e-7■■□□□ 13.7
YBX3P16989 RPL14-205ENST00000461368 170 ntTSL 21.37□□□□□ -2.191e-323■■□□□ 13.7
YBX3P16989 MACF1-223ENST00000496360 2080 ntTSL 216.74■□□□□ 0.273e-8■■□□□ 13.7
YBX3P16989 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.266e-7■■□□□ 13.7
YBX3P16989 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.82■□□□□ 0.926e-7■■□□□ 13.7
YBX3P16989 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.891e-6■■□□□ 13.7
YBX3P16989 C19orf70-202ENST00000585605 586 ntTSL 320■□□□□ 0.796e-7■■□□□ 13.7
YBX3P16989 EVL-207ENST00000553875 837 ntTSL 216.84■□□□□ 0.291e-6■■□□□ 13.7
YBX3P16989 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.021e-6■■□□□ 13.7
YBX3P16989 EVL-210ENST00000554045 1754 ntTSL 514.85□□□□□ -0.031e-6■■□□□ 13.7
YBX3P16989 EVL-214ENST00000555048 1715 ntTSL 3 BASIC13.25□□□□□ -0.291e-6■■□□□ 13.7
YBX3P16989 EVL-211ENST00000554460 616 ntTSL 312.04□□□□□ -0.481e-6■■□□□ 13.7
YBX3P16989 EVL-203ENST00000544450 3704 ntTSL 2 BASIC11.33□□□□□ -0.61e-6■■□□□ 13.7
YBX3P16989 EVL-216ENST00000555706 583 ntTSL 410.16□□□□□ -0.781e-6■■□□□ 13.7
YBX3P16989 EVL-205ENST00000553771 560 ntTSL 410.16□□□□□ -0.781e-6■■□□□ 13.7
YBX3P16989 EVL-224ENST00000557637 501 ntTSL 29.84□□□□□ -0.831e-6■■□□□ 13.7
YBX3P16989 EVL-222ENST00000557153 590 ntTSL 46.57□□□□□ -1.361e-6■■□□□ 13.7
YBX3P16989 NONO-203ENST00000373856 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -03e-11■■□□□ 13.7
YBX3P16989 NONO-202ENST00000373841 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.283e-11■■□□□ 13.7
YBX3P16989 NONO-215ENST00000535149 2882 ntTSL 2 BASIC11.7□□□□□ -0.543e-11■■□□□ 13.7
YBX3P16989 NONO-212ENST00000474431 644 ntTSL 511.39□□□□□ -0.593e-11■■□□□ 13.7
YBX3P16989 NONO-201ENST00000276079 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.643e-11■■□□□ 13.7
YBX3P16989 NONO-204ENST00000413858 855 ntTSL 310.19□□□□□ -0.783e-11■■□□□ 13.7
YBX3P16989 NONO-210ENST00000472185 397 ntTSL 59.57□□□□□ -0.883e-11■■□□□ 13.7
YBX3P16989 NONO-206ENST00000420903 622 ntTSL 37.69□□□□□ -1.183e-11■■□□□ 13.7
YBX3P16989 NONO-208ENST00000454976 726 ntTSL 47.32□□□□□ -1.243e-11■■□□□ 13.7
YBX3P16989 NONO-207ENST00000450092 491 ntTSL 56.53□□□□□ -1.363e-11■■□□□ 13.7
YBX3P16989 NONO-213ENST00000486613 555 ntTSL 24.76□□□□□ -1.653e-11■■□□□ 13.7
YBX3P16989 UBA52-206ENST00000596272 508 ntTSL 29.02□□□□□ -0.977e-56■■□□□ 13.7
YBX3P16989 RPL19-206ENST00000580333 577 ntTSL 216.06■□□□□ 0.161e-323■■□□□ 13.7
YBX3P16989 ZMYND8-220ENST00000617418 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.792e-7■■□□□ 13.7
YBX3P16989 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC9.88□□□□□ -0.832e-7■■□□□ 13.7
YBX3P16989 ZMYND8-214ENST00000467200 3634 ntAPPRIS ALT2 TSL 1 (best)9.83□□□□□ -0.842e-7■■□□□ 13.7
YBX3P16989 ZMYND8-201ENST00000262975 4139 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.942e-7■■□□□ 13.7
YBX3P16989 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.972e-7■■□□□ 13.7
YBX3P16989 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.062e-7■■□□□ 13.7
YBX3P16989 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.132e-7■■□□□ 13.7
YBX3P16989 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.832e-9■■□□□ 13.7
YBX3P16989 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.432e-9■■□□□ 13.7
YBX3P16989 TNNT1-217ENST00000593194 721 ntAPPRIS ALT2 TSL 223.47■■□□□ 1.352e-9■■□□□ 13.7
YBX3P16989 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.282e-9■■□□□ 13.7
YBX3P16989 TNNT1-207ENST00000587089 880 ntTSL 521.11■□□□□ 0.972e-9■■□□□ 13.7
YBX3P16989 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.07■□□□□ 0.962e-9■■□□□ 13.7
YBX3P16989 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.942e-9■■□□□ 13.7
YBX3P16989 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.782e-9■■□□□ 13.7
YBX3P16989 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.782e-9■■□□□ 13.7
YBX3P16989 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.412e-9■■□□□ 13.7
YBX3P16989 RHBDD2-204ENST00000454791 1831 ntTSL 230.15■■■□□ 2.421e-6■■□□□ 13.7
YBX3P16989 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.4■■■□□ 2.141e-6■■□□□ 13.7
YBX3P16989 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.461e-6■■□□□ 13.7
YBX3P16989 RHBDD2-207ENST00000468304 803 ntTSL 216.65■□□□□ 0.261e-6■■□□□ 13.7
YBX3P16989 EVL-220ENST00000556921 893 ntTSL 518.32■□□□□ 0.522e-6■■□□□ 13.7
YBX3P16989 NCAPG2-201ENST00000356309 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.426e-7■■□□□ 13.7
YBX3P16989 NCAPG2-203ENST00000409423 3957 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.586e-7■■□□□ 13.7
Retrieved 100 of 29,075 protein–RNA pairs in 648.9 ms