Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.54■□□□□ 0.88
Pcdhgb8A0A140LI48 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdhgb8A0A140LI48 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdhgb8A0A140LI48 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Pcdhgb8A0A140LI48 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdhgb8A0A140LI48 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdhgb8A0A140LI48 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
Pcdhgb8A0A140LI48 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.52■□□□□ 0.88
Pcdhgb8A0A140LI48 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdhgb8A0A140LI48 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC20.51■□□□□ 0.87
Pcdhgb8A0A140LI48 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdhgb8A0A140LI48 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdhgb8A0A140LI48 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Pcdhgb8A0A140LI48 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdhgb8A0A140LI48 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdhgb8A0A140LI48 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Pcdhgb8A0A140LI48 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdhgb8A0A140LI48 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Gm7432-201ENSMUST00000210343 879 ntBASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdhgb8A0A140LI48 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
Pcdhgb8A0A140LI48 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdhgb8A0A140LI48 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdhgb8A0A140LI48 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdhgb8A0A140LI48 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdhgb8A0A140LI48 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdhgb8A0A140LI48 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.46■□□□□ 0.87
Pcdhgb8A0A140LI48 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdhgb8A0A140LI48 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdhgb8A0A140LI48 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.46■□□□□ 0.87
Pcdhgb8A0A140LI48 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdhgb8A0A140LI48 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.45■□□□□ 0.86
Pcdhgb8A0A140LI48 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.45■□□□□ 0.86
Pcdhgb8A0A140LI48 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.44■□□□□ 0.86
Pcdhgb8A0A140LI48 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdhgb8A0A140LI48 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdhgb8A0A140LI48 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdhgb8A0A140LI48 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdhgb8A0A140LI48 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.43■□□□□ 0.86
Pcdhgb8A0A140LI48 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
Pcdhgb8A0A140LI48 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Pcdhgb8A0A140LI48 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdhgb8A0A140LI48 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdhgb8A0A140LI48 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdhgb8A0A140LI48 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdhgb8A0A140LI48 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdhgb8A0A140LI48 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdhgb8A0A140LI48 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.42■□□□□ 0.86
Pcdhgb8A0A140LI48 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.41■□□□□ 0.86
Pcdhgb8A0A140LI48 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
Pcdhgb8A0A140LI48 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdhgb8A0A140LI48 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdhgb8A0A140LI48 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Pcdhgb8A0A140LI48 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Pcdhgb8A0A140LI48 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Pcdhgb8A0A140LI48 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdhgb8A0A140LI48 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdhgb8A0A140LI48 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdhgb8A0A140LI48 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdhgb8A0A140LI48 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.38■□□□□ 0.85
Pcdhgb8A0A140LI48 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdhgb8A0A140LI48 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdhgb8A0A140LI48 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdhgb8A0A140LI48 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdhgb8A0A140LI48 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Pcdhgb8A0A140LI48 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdhgb8A0A140LI48 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.37■□□□□ 0.85
Pcdhgb8A0A140LI48 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdhgb8A0A140LI48 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
Pcdhgb8A0A140LI48 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdhgb8A0A140LI48 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Pcdhgb8A0A140LI48 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdhgb8A0A140LI48 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdhgb8A0A140LI48 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdhgb8A0A140LI48 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms