RNA–Protein interactions for RNA: ENST00000544154.1

NPIPB3-213, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5

Gene NPIPB3, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-213ENST00000544154 AEBP2Q6ZN18 517 aaPredicted RBP17.51■□□□□ 0.39
NPIPB3-213ENST00000544154 CHIC1Q5VXU3 224 aa16.15■□□□□ 0.18
NPIPB3-213ENST00000544154 POTEDQ86YR6 584 aa15.07■□□□□ 0
NPIPB3-213ENST00000544154 SENP3Q9H4L4 574 aaPredicted RBP14.93□□□□□ -0.02
NPIPB3-213ENST00000544154 PHF23Q9BUL5 403 aaPredicted RBP14.66□□□□□ -0.06
NPIPB3-213ENST00000544154 FOXD1Q16676 465 aa14.15□□□□□ -0.14
NPIPB3-213ENST00000544154 MSH5O43196 834 aa13.52□□□□□ -0.25
NPIPB3-213ENST00000544154 PIAS4Q8N2W9 510 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-213ENST00000544154 PPP6R1Q9UPN7 881 aa12.49□□□□□ -0.41
NPIPB3-213ENST00000544154 ADRA2BP18089 450 aa12.33□□□□□ -0.44
NPIPB3-213ENST00000544154 CACNB1Q02641 598 aaPredicted RBP12.24□□□□□ -0.45
NPIPB3-213ENST00000544154 PLPPR3Q6T4P5 718 aa11.86□□□□□ -0.51
NPIPB3-213ENST00000544154 DMRT2Q9Y5R5 561 aa11.73□□□□□ -0.53
NPIPB3-213ENST00000544154 MAPK8IP2Q13387 824 aaPredicted RBP11.68□□□□□ -0.54
NPIPB3-213ENST00000544154 POTEHQ6S545 545 aa11.56□□□□□ -0.56
NPIPB3-213ENST00000544154 RNF39Q9H2S5 420 aa11.52□□□□□ -0.57
NPIPB3-213ENST00000544154 C1QBPQ07021 282 aaKnown RBP11.23□□□□□ -0.61
NPIPB3-213ENST00000544154 DCAF8L1A6NGE4 600 aa11.2□□□□□ -0.62
NPIPB3-213ENST00000544154 SCAF1Q9H7N4 1312 aaKnown RBP11.11□□□□□ -0.63
NPIPB3-213ENST00000544154 HOXD11P31277 338 aaPredicted RBP10.91□□□□□ -0.66
NPIPB3-213ENST00000544154 DNAJC5BQ9UF47 199 aa10.71□□□□□ -0.69
NPIPB3-213ENST00000544154 RNF216Q9NWF9 866 aaPredicted RBP10.51□□□□□ -0.73
NPIPB3-213ENST00000544154 DSG3P32926 999 aa10.45□□□□□ -0.74
NPIPB3-213ENST00000544154 SP7Q8TDD2 431 aaPredicted RBP10.34□□□□□ -0.75
NPIPB3-213ENST00000544154 CNKSR2Q8WXI2 1034 aa10.32□□□□□ -0.76
NPIPB3-213ENST00000544154 PPP4R3CPQ6ZMV5 832 aa10.31□□□□□ -0.76
NPIPB3-213ENST00000544154 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.29□□□□□ -0.76
NPIPB3-213ENST00000544154 SPINK5Q9NQ38 1064 aaPredicted RBP10.25□□□□□ -0.77
NPIPB3-213ENST00000544154 CAPN15O75808 1086 aa10.17□□□□□ -0.78
NPIPB3-213ENST00000544154 CHRDL2Q6WN34 429 aa10.13□□□□□ -0.79
NPIPB3-213ENST00000544154 U3KPZ7 1027 aaPredicted RBP10.07□□□□□ -0.8
NPIPB3-213ENST00000544154 ABCB7O75027 752 aa9.89□□□□□ -0.83
NPIPB3-213ENST00000544154 PLSCR2Q9NRY7 297 aa9.89□□□□□ -0.83
NPIPB3-213ENST00000544154 RBM42Q9BTD8 480 aaKnown RBP9.86□□□□□ -0.83
NPIPB3-213ENST00000544154 TRHP20396 242 aaPredicted RBP9.76□□□□□ -0.85
NPIPB3-213ENST00000544154 HAX1O00165 279 aa9.74□□□□□ -0.85
NPIPB3-213ENST00000544154 EVX2Q03828 476 aa9.71□□□□□ -0.86
NPIPB3-213ENST00000544154 PIP4P2Q8N4L2 257 aa9.71□□□□□ -0.86
NPIPB3-213ENST00000544154 LHX8Q68G74 356 aa9.68□□□□□ -0.86
NPIPB3-213ENST00000544154 ZNF219Q9P2Y4 722 aaPredicted RBP9.67□□□□□ -0.86
NPIPB3-213ENST00000544154 FXR2P51116 673 aaKnown RBP eCLIP9.5□□□□□ -0.89
NPIPB3-213ENST00000544154 NPM3O75607 178 aaKnown RBP9.49□□□□□ -0.89
NPIPB3-213ENST00000544154 NCBP3Q53F19 620 aaKnown RBP9.48□□□□□ -0.89
NPIPB3-213ENST00000544154 AKT1S1Q96B36 256 aa9.47□□□□□ -0.89
NPIPB3-213ENST00000544154 APLP2Q06481 763 aa9.46□□□□□ -0.9
NPIPB3-213ENST00000544154 REM2Q8IYK8 340 aaPredicted RBP9.43□□□□□ -0.9
NPIPB3-213ENST00000544154 SLC4A2P04920 1241 aa9.39□□□□□ -0.91
NPIPB3-213ENST00000544154 PITPNM1O00562 1244 aa9.35□□□□□ -0.91
NPIPB3-213ENST00000544154 GABBR2O75899 941 aa9.34□□□□□ -0.91
NPIPB3-213ENST00000544154 POLA2Q14181 598 aa9.3□□□□□ -0.92
NPIPB3-213ENST00000544154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.25□□□□□ -0.93
NPIPB3-213ENST00000544154 HNRNPUL2Q1KMD3 747 aaKnown RBP9.25□□□□□ -0.93
NPIPB3-213ENST00000544154 C19orf67A6NJJ6 358 aa9.23□□□□□ -0.93
NPIPB3-213ENST00000544154 POTEIP0CG38 1075 aa9.22□□□□□ -0.93
NPIPB3-213ENST00000544154 SAMD1Q6SPF0 538 aaPredicted RBP9.18□□□□□ -0.94
NPIPB3-213ENST00000544154 POTEMA6NI47 508 aa9.17□□□□□ -0.94
NPIPB3-213ENST00000544154 POTEGQ6S5H5 508 aa9.1□□□□□ -0.95
NPIPB3-213ENST00000544154 PRKAR2AP13861 404 aaKnown RBP9.06□□□□□ -0.96
NPIPB3-213ENST00000544154 OSCARQ8IYS5 282 aa9.05□□□□□ -0.96
NPIPB3-213ENST00000544154 OTUD5Q96G74 571 aa9.03□□□□□ -0.96
NPIPB3-213ENST00000544154 PCDH10Q9P2E7 1040 aa9.02□□□□□ -0.97
NPIPB3-213ENST00000544154 ZBTB12Q9Y330 459 aaPredicted RBP8.91□□□□□ -0.98
NPIPB3-213ENST00000544154 POTEB2H3BUK9 544 aa8.9□□□□□ -0.98
NPIPB3-213ENST00000544154 LCE2DQ5TA82 110 aaPredicted RBP8.82□□□□□ -1
NPIPB3-213ENST00000544154 CHADLQ6NUI6 762 aa8.78□□□□□ -1
NPIPB3-213ENST00000544154 DCBLD2Q96PD2 775 aa8.76□□□□□ -1.01
NPIPB3-213ENST00000544154 CLEC11AQ9Y240 323 aa8.75□□□□□ -1.01
NPIPB3-213ENST00000544154 ATF5Q9Y2D1 282 aaPredicted RBP8.75□□□□□ -1.01
NPIPB3-213ENST00000544154 CLCN6P51797 869 aa8.72□□□□□ -1.01
NPIPB3-213ENST00000544154 MYCNP04198 464 aaPredicted RBP8.71□□□□□ -1.02
NPIPB3-213ENST00000544154 SPDYE1Q8NFV5 336 aaPredicted RBP8.7□□□□□ -1.02
NPIPB3-213ENST00000544154 CD44P16070 742 aaKnown RBP8.69□□□□□ -1.02
NPIPB3-213ENST00000544154 SPDYE2BA6NHP3 402 aa8.63□□□□□ -1.03
NPIPB3-213ENST00000544154 SPDYE6P0CI01 402 aa8.63□□□□□ -1.03
NPIPB3-213ENST00000544154 SPDYE2Q495Y8 402 aa8.63□□□□□ -1.03
NPIPB3-213ENST00000544154 POTEJP0CG39 1038 aa8.62□□□□□ -1.03
NPIPB3-213ENST00000544154 FAM163AQ96GL9 167 aaPredicted RBP8.58□□□□□ -1.04
NPIPB3-213ENST00000544154 GALR2O43603 387 aaPredicted RBP8.54□□□□□ -1.04
NPIPB3-213ENST00000544154 CDAN1Q8IWY9 1227 aa8.54□□□□□ -1.04
NPIPB3-213ENST00000544154 PELP1Q8IZL8 1130 aaKnown RBP8.54□□□□□ -1.04
NPIPB3-213ENST00000544154 ZNF579Q8NAF0 562 aaKnown RBP8.54□□□□□ -1.04
NPIPB3-213ENST00000544154 FARP1Q9Y4F1 1045 aaPredicted RBP8.51□□□□□ -1.05
NPIPB3-213ENST00000544154 MMRN1Q13201 1228 aa8.47□□□□□ -1.05
NPIPB3-213ENST00000544154 PRR29P0C7W0 189 aa8.46□□□□□ -1.06
NPIPB3-213ENST00000544154 SSUH2Q9Y2M2 353 aa8.46□□□□□ -1.06
NPIPB3-213ENST00000544154 ZRANB1Q9UGI0 708 aa8.41□□□□□ -1.06
NPIPB3-213ENST00000544154 KCNA4P22459 653 aa8.39□□□□□ -1.07
NPIPB3-213ENST00000544154 MAMSTRQ6ZN01 415 aa8.39□□□□□ -1.07
NPIPB3-213ENST00000544154 SPNS2Q8IVW8 549 aa8.38□□□□□ -1.07
NPIPB3-213ENST00000544154 METRNQ9UJH8 293 aa8.37□□□□□ -1.07
NPIPB3-213ENST00000544154 ZNF692Q9BU19 519 aaPredicted RBP8.35□□□□□ -1.07
NPIPB3-213ENST00000544154 C7P10643 843 aa8.29□□□□□ -1.08
NPIPB3-213ENST00000544154 ASTLQ6HA08 431 aaPredicted RBP8.29□□□□□ -1.08
NPIPB3-213ENST00000544154 FBLN2P98095 1184 aa8.27□□□□□ -1.09
NPIPB3-213ENST00000544154 MKRN4PQ13434 485 aaPredicted RBP8.27□□□□□ -1.09
NPIPB3-213ENST00000544154 SLC39A7Q92504 469 aa8.27□□□□□ -1.09
NPIPB3-213ENST00000544154 SCUBE2Q9NQ36 999 aa8.27□□□□□ -1.09
NPIPB3-213ENST00000544154 ATMINO43313 823 aaPredicted RBP8.25□□□□□ -1.09
NPIPB3-213ENST00000544154 PHF12Q96QT6 1004 aa8.25□□□□□ -1.09
NPIPB3-213ENST00000544154 POTEFA5A3E0 1075 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms