RNA–Protein interactions for RNA: ENST00000534771.1

COPB1-212, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 4

Gene COPB1, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-212ENST00000534771 AEBP2Q6ZN18 517 aaPredicted RBP12.7□□□□□ -0.38
COPB1-212ENST00000534771 CHIC1Q5VXU3 224 aa11.81□□□□□ -0.52
COPB1-212ENST00000534771 POTEDQ86YR6 584 aa11.61□□□□□ -0.55
COPB1-212ENST00000534771 SENP3Q9H4L4 574 aaPredicted RBP10.94□□□□□ -0.66
COPB1-212ENST00000534771 PHF23Q9BUL5 403 aaPredicted RBP10.73□□□□□ -0.69
COPB1-212ENST00000534771 FOXD1Q16676 465 aa10.38□□□□□ -0.75
COPB1-212ENST00000534771 MSH5O43196 834 aa10.05□□□□□ -0.8
COPB1-212ENST00000534771 PIAS4Q8N2W9 510 aaPredicted RBP9.45□□□□□ -0.9
COPB1-212ENST00000534771 CACNB1Q02641 598 aaPredicted RBP9.34□□□□□ -0.91
COPB1-212ENST00000534771 PPP6R1Q9UPN7 881 aa8.95□□□□□ -0.98
COPB1-212ENST00000534771 POTEHQ6S545 545 aa8.89□□□□□ -0.99
COPB1-212ENST00000534771 ADRA2BP18089 450 aa8.88□□□□□ -0.99
COPB1-212ENST00000534771 DMRT2Q9Y5R5 561 aa8.52□□□□□ -1.05
COPB1-212ENST00000534771 MAPK8IP2Q13387 824 aaPredicted RBP8.49□□□□□ -1.05
COPB1-212ENST00000534771 RNF39Q9H2S5 420 aa8.49□□□□□ -1.05
COPB1-212ENST00000534771 DCAF8L1A6NGE4 600 aa8.36□□□□□ -1.07
COPB1-212ENST00000534771 PLPPR3Q6T4P5 718 aa8.35□□□□□ -1.07
COPB1-212ENST00000534771 C1QBPQ07021 282 aaKnown RBP8.3□□□□□ -1.08
COPB1-212ENST00000534771 SCAF1Q9H7N4 1312 aaKnown RBP8.06□□□□□ -1.12
COPB1-212ENST00000534771 PLSCR2Q9NRY7 297 aa7.86□□□□□ -1.15
COPB1-212ENST00000534771 SP7Q8TDD2 431 aaPredicted RBP7.84□□□□□ -1.15
COPB1-212ENST00000534771 HOXD11P31277 338 aaPredicted RBP7.79□□□□□ -1.16
COPB1-212ENST00000534771 DNAJC5BQ9UF47 199 aa7.64□□□□□ -1.19
COPB1-212ENST00000534771 DSG3P32926 999 aa7.63□□□□□ -1.19
COPB1-212ENST00000534771 CHRDL2Q6WN34 429 aa7.56□□□□□ -1.2
COPB1-212ENST00000534771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.51□□□□□ -1.212e-7■□□□□ 10.3
COPB1-212ENST00000534771 CAPN15O75808 1086 aa7.49□□□□□ -1.21
COPB1-212ENST00000534771 RNF216Q9NWF9 866 aaPredicted RBP7.47□□□□□ -1.21
COPB1-212ENST00000534771 SPINK5Q9NQ38 1064 aaPredicted RBP7.44□□□□□ -1.22
COPB1-212ENST00000534771 HAX1O00165 279 aa7.38□□□□□ -1.23
COPB1-212ENST00000534771 LHX8Q68G74 356 aa7.38□□□□□ -1.23
COPB1-212ENST00000534771 CNKSR2Q8WXI2 1034 aa7.29□□□□□ -1.24
COPB1-212ENST00000534771 RBM42Q9BTD8 480 aaKnown RBP7.27□□□□□ -1.25
COPB1-212ENST00000534771 ABCB7O75027 752 aa7.24□□□□□ -1.25
COPB1-212ENST00000534771 PPP4R3CPQ6ZMV5 832 aa7.22□□□□□ -1.25
COPB1-212ENST00000534771 EVX2Q03828 476 aa7.2□□□□□ -1.26
COPB1-212ENST00000534771 U3KPZ7 1027 aaPredicted RBP7.19□□□□□ -1.26
COPB1-212ENST00000534771 PIP4P2Q8N4L2 257 aa7.17□□□□□ -1.26
COPB1-212ENST00000534771 TRHP20396 242 aaPredicted RBP7.15□□□□□ -1.26
COPB1-212ENST00000534771 POTEMA6NI47 508 aa7□□□□□ -1.29
COPB1-212ENST00000534771 ZNF219Q9P2Y4 722 aaPredicted RBP6.98□□□□□ -1.29
COPB1-212ENST00000534771 GABBR2O75899 941 aa6.95□□□□□ -1.3
COPB1-212ENST00000534771 POTEGQ6S5H5 508 aa6.94□□□□□ -1.3
COPB1-212ENST00000534771 FXR2P51116 673 aaKnown RBP eCLIP6.93□□□□□ -1.33e-8■■■■■ 34.4
COPB1-212ENST00000534771 AKT1S1Q96B36 256 aa6.9□□□□□ -1.3
COPB1-212ENST00000534771 REM2Q8IYK8 340 aaPredicted RBP6.88□□□□□ -1.31
COPB1-212ENST00000534771 PCDH10Q9P2E7 1040 aa6.87□□□□□ -1.31
COPB1-212ENST00000534771 APLP2Q06481 763 aa6.83□□□□□ -1.32
COPB1-212ENST00000534771 PITPNM1O00562 1244 aa6.81□□□□□ -1.32
COPB1-212ENST00000534771 POTEIP0CG38 1075 aa6.79□□□□□ -1.32
COPB1-212ENST00000534771 C19orf67A6NJJ6 358 aa6.75□□□□□ -1.33
COPB1-212ENST00000534771 OTUD5Q96G74 571 aa6.73□□□□□ -1.33
COPB1-212ENST00000534771 POLA2Q14181 598 aa6.69□□□□□ -1.34
COPB1-212ENST00000534771 PRKAR2AP13861 404 aaKnown RBP6.64□□□□□ -1.35
COPB1-212ENST00000534771 NCBP3Q53F19 620 aaKnown RBP6.61□□□□□ -1.35
COPB1-212ENST00000534771 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.59□□□□□ -1.35
COPB1-212ENST00000534771 HNRNPUL2Q1KMD3 747 aaKnown RBP6.59□□□□□ -1.35
COPB1-212ENST00000534771 DCBLD2Q96PD2 775 aa6.56□□□□□ -1.36
COPB1-212ENST00000534771 POTEB2H3BUK9 544 aa6.55□□□□□ -1.36
COPB1-212ENST00000534771 FAM163AQ96GL9 167 aaPredicted RBP6.53□□□□□ -1.36
COPB1-212ENST00000534771 NPM3O75607 178 aaKnown RBP6.52□□□□□ -1.37
COPB1-212ENST00000534771 SAMD1Q6SPF0 538 aaPredicted RBP6.52□□□□□ -1.37
COPB1-212ENST00000534771 SLC4A2P04920 1241 aa6.5□□□□□ -1.37
COPB1-212ENST00000534771 LCE2DQ5TA82 110 aaPredicted RBP6.49□□□□□ -1.37
COPB1-212ENST00000534771 OSCARQ8IYS5 282 aa6.49□□□□□ -1.37
COPB1-212ENST00000534771 CDAN1Q8IWY9 1227 aa6.47□□□□□ -1.37
COPB1-212ENST00000534771 MMRN1Q13201 1228 aa6.41□□□□□ -1.38
COPB1-212ENST00000534771 CLEC11AQ9Y240 323 aa6.41□□□□□ -1.38
COPB1-212ENST00000534771 CLCN6P51797 869 aa6.38□□□□□ -1.39
COPB1-212ENST00000534771 CHADLQ6NUI6 762 aa6.38□□□□□ -1.39
COPB1-212ENST00000534771 ZBTB12Q9Y330 459 aaPredicted RBP6.37□□□□□ -1.39
COPB1-212ENST00000534771 CD44P16070 742 aaKnown RBP6.36□□□□□ -1.39
COPB1-212ENST00000534771 SPNS2Q8IVW8 549 aa6.32□□□□□ -1.4
COPB1-212ENST00000534771 SPDYE1Q8NFV5 336 aaPredicted RBP6.29□□□□□ -1.4
COPB1-212ENST00000534771 POTEJP0CG39 1038 aa6.28□□□□□ -1.4
COPB1-212ENST00000534771 MAMSTRQ6ZN01 415 aa6.25□□□□□ -1.41
COPB1-212ENST00000534771 GALR2O43603 387 aaPredicted RBP6.22□□□□□ -1.41
COPB1-212ENST00000534771 PELP1Q8IZL8 1130 aaKnown RBP6.21□□□□□ -1.42
COPB1-212ENST00000534771 SCUBE2Q9NQ36 999 aa6.17□□□□□ -1.42
COPB1-212ENST00000534771 ZNF579Q8NAF0 562 aaKnown RBP6.15□□□□□ -1.42
COPB1-212ENST00000534771 METRNQ9UJH8 293 aa6.15□□□□□ -1.42
COPB1-212ENST00000534771 ZRANB1Q9UGI0 708 aa6.14□□□□□ -1.43
COPB1-212ENST00000534771 FARP1Q9Y4F1 1045 aaPredicted RBP6.14□□□□□ -1.43
COPB1-212ENST00000534771 PRR29P0C7W0 189 aa6.13□□□□□ -1.43
COPB1-212ENST00000534771 SPDYE2BA6NHP3 402 aa6.11□□□□□ -1.43
COPB1-212ENST00000534771 SPDYE6P0CI01 402 aa6.11□□□□□ -1.43
COPB1-212ENST00000534771 SPDYE2Q495Y8 402 aa6.11□□□□□ -1.43
COPB1-212ENST00000534771 C7P10643 843 aa6.08□□□□□ -1.44
COPB1-212ENST00000534771 ST18O60284 1047 aa6.06□□□□□ -1.44
COPB1-212ENST00000534771 SLC39A7Q92504 469 aa6.06□□□□□ -1.44
COPB1-212ENST00000534771 ATF5Q9Y2D1 282 aaPredicted RBP6.05□□□□□ -1.44
COPB1-212ENST00000534771 MYCNP04198 464 aaPredicted RBP6.02□□□□□ -1.45
COPB1-212ENST00000534771 PHF12Q96QT6 1004 aa5.97□□□□□ -1.45
COPB1-212ENST00000534771 ATMINO43313 823 aaPredicted RBP5.96□□□□□ -1.46
COPB1-212ENST00000534771 ASTLQ6HA08 431 aaPredicted RBP5.96□□□□□ -1.46
COPB1-212ENST00000534771 ZNF692Q9BU19 519 aaPredicted RBP5.95□□□□□ -1.46
COPB1-212ENST00000534771 SSUH2Q9Y2M2 353 aa5.9□□□□□ -1.46
COPB1-212ENST00000534771 POTEFA5A3E0 1075 aa5.89□□□□□ -1.47
COPB1-212ENST00000534771 MARVELD3Q96A59 401 aa5.89□□□□□ -1.47
COPB1-212ENST00000534771 SLAIN1Q8ND83 568 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms