RNA–Protein interactions for RNA: ENST00000513228.1

SMN1-208, Transcript of survival of motor neuron 1, telomeric, humanhuman

TSL 2

Gene SMN1, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN1-208ENST00000513228 AEBP2Q6ZN18 517 aaPredicted RBP15.81■□□□□ 0.12
SMN1-208ENST00000513228 CHIC1Q5VXU3 224 aa14.75□□□□□ -0.05
SMN1-208ENST00000513228 POTEDQ86YR6 584 aa13.87□□□□□ -0.19
SMN1-208ENST00000513228 SENP3Q9H4L4 574 aaPredicted RBP13.64□□□□□ -0.23
SMN1-208ENST00000513228 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
SMN1-208ENST00000513228 FOXD1Q16676 465 aa12.85□□□□□ -0.35
SMN1-208ENST00000513228 MSH5O43196 834 aa12.41□□□□□ -0.42
SMN1-208ENST00000513228 PIAS4Q8N2W9 510 aaPredicted RBP11.74□□□□□ -0.53
SMN1-208ENST00000513228 CACNB1Q02641 598 aaPredicted RBP11.29□□□□□ -0.6
SMN1-208ENST00000513228 PPP6R1Q9UPN7 881 aa11.23□□□□□ -0.61
SMN1-208ENST00000513228 ADRA2BP18089 450 aa11.12□□□□□ -0.63
SMN1-208ENST00000513228 PLPPR3Q6T4P5 718 aa10.73□□□□□ -0.69
SMN1-208ENST00000513228 POTEHQ6S545 545 aa10.67□□□□□ -0.7
SMN1-208ENST00000513228 DMRT2Q9Y5R5 561 aa10.66□□□□□ -0.7
SMN1-208ENST00000513228 MAPK8IP2Q13387 824 aaPredicted RBP10.54□□□□□ -0.72
SMN1-208ENST00000513228 RNF39Q9H2S5 420 aa10.5□□□□□ -0.73
SMN1-208ENST00000513228 C1QBPQ07021 282 aaKnown RBP10.29□□□□□ -0.76
SMN1-208ENST00000513228 DCAF8L1A6NGE4 600 aa10.28□□□□□ -0.76
SMN1-208ENST00000513228 SCAF1Q9H7N4 1312 aaKnown RBP10.18□□□□□ -0.78
SMN1-208ENST00000513228 HOXD11P31277 338 aaPredicted RBP9.86□□□□□ -0.83
SMN1-208ENST00000513228 DNAJC5BQ9UF47 199 aa9.72□□□□□ -0.85
SMN1-208ENST00000513228 SP7Q8TDD2 431 aaPredicted RBP9.51□□□□□ -0.89
SMN1-208ENST00000513228 RNF216Q9NWF9 866 aaPredicted RBP9.51□□□□□ -0.89
SMN1-208ENST00000513228 DSG3P32926 999 aa9.49□□□□□ -0.89
SMN1-208ENST00000513228 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.4□□□□□ -0.9
SMN1-208ENST00000513228 CNKSR2Q8WXI2 1034 aa9.33□□□□□ -0.92
SMN1-208ENST00000513228 CAPN15O75808 1086 aa9.3□□□□□ -0.92
SMN1-208ENST00000513228 CHRDL2Q6WN34 429 aa9.29□□□□□ -0.92
SMN1-208ENST00000513228 PPP4R3CPQ6ZMV5 832 aa9.27□□□□□ -0.93
SMN1-208ENST00000513228 SPINK5Q9NQ38 1064 aaPredicted RBP9.26□□□□□ -0.93
SMN1-208ENST00000513228 PLSCR2Q9NRY7 297 aa9.23□□□□□ -0.93
SMN1-208ENST00000513228 RBM42Q9BTD8 480 aaKnown RBP9.08□□□□□ -0.96
SMN1-208ENST00000513228 U3KPZ7 1027 aaPredicted RBP9.08□□□□□ -0.96
SMN1-208ENST00000513228 NCBP3Q53F19 620 aaKnown RBP9.03□□□□□ -0.96
SMN1-208ENST00000513228 HAX1O00165 279 aa8.98□□□□□ -0.97
SMN1-208ENST00000513228 ABCB7O75027 752 aa8.98□□□□□ -0.97
SMN1-208ENST00000513228 LHX8Q68G74 356 aa8.92□□□□□ -0.98
SMN1-208ENST00000513228 TRHP20396 242 aaPredicted RBP8.9□□□□□ -0.98
SMN1-208ENST00000513228 KCNA4P22459 653 aa8.86□□□□□ -0.99
SMN1-208ENST00000513228 PIP4P2Q8N4L2 257 aa8.84□□□□□ -0.99
SMN1-208ENST00000513228 ZNF219Q9P2Y4 722 aaPredicted RBP8.83□□□□□ -1
SMN1-208ENST00000513228 NPM3O75607 178 aaKnown RBP8.81□□□□□ -1
SMN1-208ENST00000513228 EVX2Q03828 476 aa8.79□□□□□ -1
SMN1-208ENST00000513228 APLP2Q06481 763 aa8.71□□□□□ -1.02
SMN1-208ENST00000513228 AKT1S1Q96B36 256 aa8.65□□□□□ -1.02
SMN1-208ENST00000513228 FXR2P51116 673 aaKnown RBP eCLIP8.63□□□□□ -1.03
SMN1-208ENST00000513228 REM2Q8IYK8 340 aaPredicted RBP8.58□□□□□ -1.04
SMN1-208ENST00000513228 GABBR2O75899 941 aa8.53□□□□□ -1.04
SMN1-208ENST00000513228 PITPNM1O00562 1244 aa8.49□□□□□ -1.05
SMN1-208ENST00000513228 SLC4A1APQ9BWU0 796 aaKnown RBP8.47□□□□□ -1.05
SMN1-208ENST00000513228 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.46□□□□□ -1.06
SMN1-208ENST00000513228 HNRNPUL2Q1KMD3 747 aaKnown RBP8.46□□□□□ -1.06
SMN1-208ENST00000513228 POTEMA6NI47 508 aa8.45□□□□□ -1.06
SMN1-208ENST00000513228 POLA2Q14181 598 aa8.43□□□□□ -1.06
SMN1-208ENST00000513228 C19orf67A6NJJ6 358 aa8.39□□□□□ -1.07
SMN1-208ENST00000513228 POTEGQ6S5H5 508 aa8.39□□□□□ -1.07
SMN1-208ENST00000513228 SAMD1Q6SPF0 538 aaPredicted RBP8.37□□□□□ -1.07
SMN1-208ENST00000513228 PCDH10Q9P2E7 1040 aa8.37□□□□□ -1.07
SMN1-208ENST00000513228 SLC4A2P04920 1241 aa8.36□□□□□ -1.07
SMN1-208ENST00000513228 POTEIP0CG38 1075 aa8.34□□□□□ -1.07
SMN1-208ENST00000513228 PRKAR2AP13861 404 aaKnown RBP8.26□□□□□ -1.09
SMN1-208ENST00000513228 OTUD5Q96G74 571 aa8.22□□□□□ -1.09
SMN1-208ENST00000513228 FOXD4L1Q9NU39 408 aa8.2□□□□□ -1.1
SMN1-208ENST00000513228 OSCARQ8IYS5 282 aa8.19□□□□□ -1.1
SMN1-208ENST00000513228 MYCNP04198 464 aaPredicted RBP8.18□□□□□ -1.1
SMN1-208ENST00000513228 ZBTB12Q9Y330 459 aaPredicted RBP8.16□□□□□ -1.1
SMN1-208ENST00000513228 EHMT2Q96KQ7 1210 aa8.14□□□□□ -1.11
SMN1-208ENST00000513228 ZBTB22O15209 634 aa8.08□□□□□ -1.12
SMN1-208ENST00000513228 DCBLD2Q96PD2 775 aa8.08□□□□□ -1.12
SMN1-208ENST00000513228 POTEB2H3BUK9 544 aa8.04□□□□□ -1.12
SMN1-208ENST00000513228 CLCN6P51797 869 aa8.03□□□□□ -1.12
SMN1-208ENST00000513228 CLEC11AQ9Y240 323 aa8□□□□□ -1.13
SMN1-208ENST00000513228 LCE2DQ5TA82 110 aaPredicted RBP7.97□□□□□ -1.13
SMN1-208ENST00000513228 CHADLQ6NUI6 762 aa7.95□□□□□ -1.14
SMN1-208ENST00000513228 SPDYE1Q8NFV5 336 aaPredicted RBP7.95□□□□□ -1.14
SMN1-208ENST00000513228 CSRNP3Q8WYN3 585 aa7.95□□□□□ -1.14
SMN1-208ENST00000513228 CD44P16070 742 aaKnown RBP7.94□□□□□ -1.14
SMN1-208ENST00000513228 ATF5Q9Y2D1 282 aaPredicted RBP7.93□□□□□ -1.14
SMN1-208ENST00000513228 FAM163AQ96GL9 167 aaPredicted RBP7.9□□□□□ -1.14
SMN1-208ENST00000513228 ATXN8OSP0DMR3 200 aa7.89□□□□□ -1.15
SMN1-208ENST00000513228 CDAN1Q8IWY9 1227 aa7.85□□□□□ -1.15
SMN1-208ENST00000513228 SPDYE2BA6NHP3 402 aa7.83□□□□□ -1.16
SMN1-208ENST00000513228 SPDYE6P0CI01 402 aa7.83□□□□□ -1.16
SMN1-208ENST00000513228 SPDYE2Q495Y8 402 aa7.83□□□□□ -1.16
SMN1-208ENST00000513228 MMRN1Q13201 1228 aa7.78□□□□□ -1.16
SMN1-208ENST00000513228 POTEJP0CG39 1038 aa7.76□□□□□ -1.17
SMN1-208ENST00000513228 MAMSTRQ6ZN01 415 aa7.76□□□□□ -1.17
SMN1-208ENST00000513228 ZNF579Q8NAF0 562 aaKnown RBP7.76□□□□□ -1.17
SMN1-208ENST00000513228 GALR2O43603 387 aaPredicted RBP7.75□□□□□ -1.17
SMN1-208ENST00000513228 FBLN2P98095 1184 aa7.74□□□□□ -1.17
SMN1-208ENST00000513228 FARP1Q9Y4F1 1045 aaPredicted RBP7.73□□□□□ -1.17
SMN1-208ENST00000513228 PRR29P0C7W0 189 aa7.72□□□□□ -1.17
SMN1-208ENST00000513228 PELP1Q8IZL8 1130 aaKnown RBP7.7□□□□□ -1.18
SMN1-208ENST00000513228 SPNS2Q8IVW8 549 aa7.68□□□□□ -1.18
SMN1-208ENST00000513228 ZRANB1Q9UGI0 708 aa7.67□□□□□ -1.18
SMN1-208ENST00000513228 SCUBE2Q9NQ36 999 aa7.64□□□□□ -1.19
SMN1-208ENST00000513228 METRNQ9UJH8 293 aa7.64□□□□□ -1.19
SMN1-208ENST00000513228 SSUH2Q9Y2M2 353 aa7.61□□□□□ -1.19
SMN1-208ENST00000513228 C7P10643 843 aa7.6□□□□□ -1.19
SMN1-208ENST00000513228 SLC39A7Q92504 469 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms