RNA–Protein interactions for RNA: ENST00000512392.5

CHD1-208, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 2

Gene CHD1, Length 1,968 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-208ENST00000512392 AEBP2Q6ZN18 517 aaPredicted RBP20.89■□□□□ 0.93
CHD1-208ENST00000512392 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
CHD1-208ENST00000512392 PHF23Q9BUL5 403 aaPredicted RBP18.05■□□□□ 0.48
CHD1-208ENST00000512392 SENP3Q9H4L4 574 aaPredicted RBP17.75■□□□□ 0.43
CHD1-208ENST00000512392 PLPPR3Q6T4P5 718 aa16.73■□□□□ 0.27
CHD1-208ENST00000512392 FOXD1Q16676 465 aa16.44■□□□□ 0.22
CHD1-208ENST00000512392 PPP6R1Q9UPN7 881 aa15.89■□□□□ 0.13
CHD1-208ENST00000512392 ADRA2BP18089 450 aa15.87■□□□□ 0.13
CHD1-208ENST00000512392 PIAS4Q8N2W9 510 aaPredicted RBP15.52■□□□□ 0.07
CHD1-208ENST00000512392 MSH5O43196 834 aa15.15■□□□□ 0.02
CHD1-208ENST00000512392 PPP4R3CPQ6ZMV5 832 aa14.74□□□□□ -0.05
CHD1-208ENST00000512392 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
CHD1-208ENST00000512392 KCNA4P22459 653 aa14.49□□□□□ -0.09
CHD1-208ENST00000512392 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
CHD1-208ENST00000512392 MAPK8IP2Q13387 824 aaPredicted RBP14.37□□□□□ -0.11
CHD1-208ENST00000512392 CNKSR2Q8WXI2 1034 aa14.33□□□□□ -0.12
CHD1-208ENST00000512392 DMRT2Q9Y5R5 561 aa14.18□□□□□ -0.14
CHD1-208ENST00000512392 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
CHD1-208ENST00000512392 RNF216Q9NWF9 866 aaPredicted RBP14.02□□□□□ -0.17
CHD1-208ENST00000512392 SLC24A1O60721 1099 aa13.96□□□□□ -0.18
CHD1-208ENST00000512392 HOXD11P31277 338 aaPredicted RBP13.94□□□□□ -0.18
CHD1-208ENST00000512392 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.19
CHD1-208ENST00000512392 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
CHD1-208ENST00000512392 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
CHD1-208ENST00000512392 POTEDQ86YR6 584 aa13.59□□□□□ -0.23
CHD1-208ENST00000512392 DCAF8L1A6NGE4 600 aa13.52□□□□□ -0.24
CHD1-208ENST00000512392 SLC4A2P04920 1241 aa13.35□□□□□ -0.27
CHD1-208ENST00000512392 CSRNP3Q8WYN3 585 aa13.34□□□□□ -0.27
CHD1-208ENST00000512392 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
CHD1-208ENST00000512392 ZBTB22O15209 634 aa13.32□□□□□ -0.28
CHD1-208ENST00000512392 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.27□□□□□ -0.29
CHD1-208ENST00000512392 MYCNP04198 464 aaPredicted RBP13.1□□□□□ -0.31
CHD1-208ENST00000512392 U3KPZ7 1027 aaPredicted RBP13.05□□□□□ -0.32
CHD1-208ENST00000512392 RNF39Q9H2S5 420 aa12.98□□□□□ -0.33
CHD1-208ENST00000512392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.97□□□□□ -0.33
CHD1-208ENST00000512392 HNRNPUL2Q1KMD3 747 aaKnown RBP12.97□□□□□ -0.33
CHD1-208ENST00000512392 RTN4Q9NQC3 1192 aaKnown RBP12.94□□□□□ -0.34
CHD1-208ENST00000512392 SAMD1Q6SPF0 538 aaPredicted RBP12.92□□□□□ -0.34
CHD1-208ENST00000512392 ATXN8OSP0DMR3 200 aa12.89□□□□□ -0.35
CHD1-208ENST00000512392 C1QBPQ07021 282 aaKnown RBP12.85□□□□□ -0.35
CHD1-208ENST00000512392 APLP2Q06481 763 aa12.82□□□□□ -0.36
CHD1-208ENST00000512392 ATF5Q9Y2D1 282 aaPredicted RBP12.7□□□□□ -0.38
CHD1-208ENST00000512392 SPINK5Q9NQ38 1064 aaPredicted RBP12.64□□□□□ -0.39
CHD1-208ENST00000512392 AMER1Q5JTC6 1135 aaPredicted RBP12.63□□□□□ -0.39
CHD1-208ENST00000512392 CAPN15O75808 1086 aa12.6□□□□□ -0.39
CHD1-208ENST00000512392 ZNF219Q9P2Y4 722 aaPredicted RBP12.59□□□□□ -0.39
CHD1-208ENST00000512392 CACNB1Q02641 598 aaPredicted RBP12.56□□□□□ -0.4
CHD1-208ENST00000512392 TRHP20396 242 aaPredicted RBP12.56□□□□□ -0.4
CHD1-208ENST00000512392 POLA2Q14181 598 aa12.39□□□□□ -0.43
CHD1-208ENST00000512392 DSG3P32926 999 aa12.38□□□□□ -0.43
CHD1-208ENST00000512392 ABCB7O75027 752 aa12.34□□□□□ -0.43
CHD1-208ENST00000512392 DAXXQ9UER7 740 aaPredicted RBP12.3□□□□□ -0.44
CHD1-208ENST00000512392 ZBTB12Q9Y330 459 aaPredicted RBP12.23□□□□□ -0.45
CHD1-208ENST00000512392 PRKCSHP14314 528 aaPredicted RBP12.23□□□□□ -0.45
CHD1-208ENST00000512392 FBLN2P98095 1184 aa12.21□□□□□ -0.45
CHD1-208ENST00000512392 MKRN4PQ13434 485 aaPredicted RBP12.17□□□□□ -0.46
CHD1-208ENST00000512392 FKBP8Q14318 412 aa12.05□□□□□ -0.48
CHD1-208ENST00000512392 SPDYE4A6NLX3 237 aa11.96□□□□□ -0.5
CHD1-208ENST00000512392 OSCARQ8IYS5 282 aa11.94□□□□□ -0.5
CHD1-208ENST00000512392 SPDYE2BA6NHP3 402 aa11.9□□□□□ -0.5
CHD1-208ENST00000512392 SPDYE6P0CI01 402 aa11.9□□□□□ -0.5
CHD1-208ENST00000512392 SPDYE2Q495Y8 402 aa11.9□□□□□ -0.5
CHD1-208ENST00000512392 TAOK2Q9UL54 1235 aa11.86□□□□□ -0.51
CHD1-208ENST00000512392 ZNF692Q9BU19 519 aaPredicted RBP11.85□□□□□ -0.51
CHD1-208ENST00000512392 TIMELESSQ9UNS1 1208 aa11.83□□□□□ -0.52
CHD1-208ENST00000512392 RBM42Q9BTD8 480 aaKnown RBP11.82□□□□□ -0.52
CHD1-208ENST00000512392 SSUH2Q9Y2M2 353 aa11.81□□□□□ -0.52
CHD1-208ENST00000512392 PROM2Q8N271 834 aa11.79□□□□□ -0.52
CHD1-208ENST00000512392 ARXQ96QS3 562 aa11.79□□□□□ -0.52
CHD1-208ENST00000512392 BCANQ96GW7 911 aa11.73□□□□□ -0.53
CHD1-208ENST00000512392 AKT1S1Q96B36 256 aa11.69□□□□□ -0.54
CHD1-208ENST00000512392 PABPN1Q86U42 306 aaKnown RBP eCLIP11.68□□□□□ -0.54
CHD1-208ENST00000512392 TULP1O00294 542 aaPredicted RBP11.67□□□□□ -0.54
CHD1-208ENST00000512392 PLCB2Q00722 1185 aa11.67□□□□□ -0.54
CHD1-208ENST00000512392 TPRNQ4KMQ1 711 aa11.66□□□□□ -0.54
CHD1-208ENST00000512392 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
CHD1-208ENST00000512392 REM2Q8IYK8 340 aaPredicted RBP11.56□□□□□ -0.56
CHD1-208ENST00000512392 STAG3Q9UJ98 1225 aa11.56□□□□□ -0.56
CHD1-208ENST00000512392 HAP1P54257 671 aaPredicted RBP11.52□□□□□ -0.56
CHD1-208ENST00000512392 SPDYE1Q8NFV5 336 aaPredicted RBP11.52□□□□□ -0.56
CHD1-208ENST00000512392 VASPP50552 380 aaPredicted RBP11.45□□□□□ -0.58
CHD1-208ENST00000512392 HOMEZQ8IX15 550 aa11.43□□□□□ -0.58
CHD1-208ENST00000512392 CLEC11AQ9Y240 323 aa11.43□□□□□ -0.58
CHD1-208ENST00000512392 PITPNM1O00562 1244 aa11.41□□□□□ -0.58
CHD1-208ENST00000512392 GTF3C3Q9Y5Q9 886 aa11.38□□□□□ -0.59
CHD1-208ENST00000512392 PRR29P0C7W0 189 aa11.37□□□□□ -0.59
CHD1-208ENST00000512392 MIER1Q8N108 512 aa11.34□□□□□ -0.59
CHD1-208ENST00000512392 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
CHD1-208ENST00000512392 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
CHD1-208ENST00000512392 IFNLR1Q8IU57 520 aaPredicted RBP11.29□□□□□ -0.6
CHD1-208ENST00000512392 VSIG10Q8N0Z9 540 aa11.29□□□□□ -0.6
CHD1-208ENST00000512392 CHRDL2Q6WN34 429 aa11.26□□□□□ -0.61
CHD1-208ENST00000512392 RANGAP1P46060 587 aaPredicted RBP11.24□□□□□ -0.61
CHD1-208ENST00000512392 CREBZFQ9NS37 354 aa11.24□□□□□ -0.61
CHD1-208ENST00000512392 KLHL34Q8N239 644 aa11.23□□□□□ -0.61
CHD1-208ENST00000512392 ZBTB47Q9UFB7 747 aaPredicted RBP11.23□□□□□ -0.61
CHD1-208ENST00000512392 KDM2AQ9Y2K7 1162 aa11.23□□□□□ -0.61
CHD1-208ENST00000512392 FXR2P51116 673 aaKnown RBP eCLIP11.2□□□□□ -0.62
CHD1-208ENST00000512392 PODXL2Q9NZ53 605 aa11.17□□□□□ -0.62
CHD1-208ENST00000512392 SPOCK2Q92563 424 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms