RNA–Protein interactions for RNA: ENST00000467323.1

MSH2-205, Transcript of mutS homolog 2, humanhuman

TSL 3

Gene MSH2, Length 313 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-205ENST00000467323 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
MSH2-205ENST00000467323 AEBP2Q6ZN18 517 aaPredicted RBP14.05□□□□□ -0.16
MSH2-205ENST00000467323 PHF23Q9BUL5 403 aaPredicted RBP12.8□□□□□ -0.36
MSH2-205ENST00000467323 PLPPR3Q6T4P5 718 aa12.18□□□□□ -0.46
MSH2-205ENST00000467323 SENP3Q9H4L4 574 aaPredicted RBP11.89□□□□□ -0.51
MSH2-205ENST00000467323 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
MSH2-205ENST00000467323 KCNA4P22459 653 aa11.39□□□□□ -0.59
MSH2-205ENST00000467323 ADRA2BP18089 450 aa11.28□□□□□ -0.6
MSH2-205ENST00000467323 CSRNP3Q8WYN3 585 aa11.07□□□□□ -0.64
MSH2-205ENST00000467323 PPP6R1Q9UPN7 881 aa11.04□□□□□ -0.64
MSH2-205ENST00000467323 SLC4A1APQ9BWU0 796 aaKnown RBP11.03□□□□□ -0.64
MSH2-205ENST00000467323 FOXD1Q16676 465 aa10.88□□□□□ -0.67
MSH2-205ENST00000467323 NCBP3Q53F19 620 aaKnown RBP10.8□□□□□ -0.68
MSH2-205ENST00000467323 PPP4R3CPQ6ZMV5 832 aa10.79□□□□□ -0.68
MSH2-205ENST00000467323 SLC24A1O60721 1099 aa10.72□□□□□ -0.69
MSH2-205ENST00000467323 NPM3O75607 178 aaKnown RBP10.56□□□□□ -0.72
MSH2-205ENST00000467323 AMER1Q5JTC6 1135 aaPredicted RBP10.5□□□□□ -0.73
MSH2-205ENST00000467323 PIAS4Q8N2W9 510 aaPredicted RBP10.48□□□□□ -0.73
MSH2-205ENST00000467323 ZBTB22O15209 634 aa10.46□□□□□ -0.73
MSH2-205ENST00000467323 RTN4Q9NQC3 1192 aaKnown RBP10.43□□□□□ -0.74
MSH2-205ENST00000467323 CNKSR2Q8WXI2 1034 aa10.35□□□□□ -0.75
MSH2-205ENST00000467323 FOXD4L1Q9NU39 408 aa10.31□□□□□ -0.76
MSH2-205ENST00000467323 SCAF1Q9H7N4 1312 aaKnown RBP10.27□□□□□ -0.77
MSH2-205ENST00000467323 DNAJC5BQ9UF47 199 aa10.19□□□□□ -0.78
MSH2-205ENST00000467323 FKBP8Q14318 412 aa9.98□□□□□ -0.81
MSH2-205ENST00000467323 RNF216Q9NWF9 866 aaPredicted RBP9.96□□□□□ -0.82
MSH2-205ENST00000467323 ATXN8OSP0DMR3 200 aa9.91□□□□□ -0.82
MSH2-205ENST00000467323 MAPK8IP2Q13387 824 aaPredicted RBP9.82□□□□□ -0.84
MSH2-205ENST00000467323 MSH5O43196 834 aa9.81□□□□□ -0.84
MSH2-205ENST00000467323 MYCNP04198 464 aaPredicted RBP9.79□□□□□ -0.84
MSH2-205ENST00000467323 SLC4A2P04920 1241 aa9.76□□□□□ -0.85
MSH2-205ENST00000467323 HOXD11P31277 338 aaPredicted RBP9.7□□□□□ -0.86
MSH2-205ENST00000467323 PLCB2Q00722 1185 aa9.61□□□□□ -0.87
MSH2-205ENST00000467323 DMRT2Q9Y5R5 561 aa9.59□□□□□ -0.87
MSH2-205ENST00000467323 BCANQ96GW7 911 aa9.52□□□□□ -0.89
MSH2-205ENST00000467323 HAP1P54257 671 aaPredicted RBP9.49□□□□□ -0.89
MSH2-205ENST00000467323 FBXO3Q9UK99 471 aa9.49□□□□□ -0.89
MSH2-205ENST00000467323 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.41□□□□□ -0.9
MSH2-205ENST00000467323 HNRNPUL2Q1KMD3 747 aaKnown RBP9.41□□□□□ -0.9
MSH2-205ENST00000467323 VSIG10Q8N0Z9 540 aa9.39□□□□□ -0.91
MSH2-205ENST00000467323 ATF5Q9Y2D1 282 aaPredicted RBP9.39□□□□□ -0.91
MSH2-205ENST00000467323 SAMD1Q6SPF0 538 aaPredicted RBP9.38□□□□□ -0.91
MSH2-205ENST00000467323 TAOK2Q9UL54 1235 aa9.38□□□□□ -0.91
MSH2-205ENST00000467323 DCAF8L2P0C7V8 631 aa9.37□□□□□ -0.91
MSH2-205ENST00000467323 PRKCSHP14314 528 aaPredicted RBP9.36□□□□□ -0.91
MSH2-205ENST00000467323 VASPP50552 380 aaPredicted RBP9.28□□□□□ -0.92
MSH2-205ENST00000467323 SPDYE4A6NLX3 237 aa9.26□□□□□ -0.93
MSH2-205ENST00000467323 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.26□□□□□ -0.93
MSH2-205ENST00000467323 TPRNQ4KMQ1 711 aa9.23□□□□□ -0.93
MSH2-205ENST00000467323 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.21□□□□□ -0.94
MSH2-205ENST00000467323 ZNF219Q9P2Y4 722 aaPredicted RBP9.21□□□□□ -0.94
MSH2-205ENST00000467323 PROM2Q8N271 834 aa9.19□□□□□ -0.94
MSH2-205ENST00000467323 IFNLR1Q8IU57 520 aaPredicted RBP9.18□□□□□ -0.94
MSH2-205ENST00000467323 PKD2Q13563 968 aa9.17□□□□□ -0.94
MSH2-205ENST00000467323 BBXQ8WY36 941 aaPredicted RBP9.16□□□□□ -0.94
MSH2-205ENST00000467323 U3KPZ7 1027 aaPredicted RBP9.16□□□□□ -0.94
MSH2-205ENST00000467323 DCAF8L1A6NGE4 600 aa9.15□□□□□ -0.94
MSH2-205ENST00000467323 APLP2Q06481 763 aa9.15□□□□□ -0.94
MSH2-205ENST00000467323 KDM2AQ9Y2K7 1162 aa9.11□□□□□ -0.95
MSH2-205ENST00000467323 PAXIP1Q6ZW49 1069 aaPredicted RBP9.08□□□□□ -0.96
MSH2-205ENST00000467323 FBLN2P98095 1184 aa9.06□□□□□ -0.96
MSH2-205ENST00000467323 CFAP44Q96MT7 982 aa9.06□□□□□ -0.96
MSH2-205ENST00000467323 MKRN4PQ13434 485 aaPredicted RBP9.03□□□□□ -0.96
MSH2-205ENST00000467323 ECM2O94769 699 aaPredicted RBP9.01□□□□□ -0.97
MSH2-205ENST00000467323 SPRYD3Q8NCJ5 442 aa9□□□□□ -0.97
MSH2-205ENST00000467323 SPOCK2Q92563 424 aa9□□□□□ -0.97
MSH2-205ENST00000467323 KLHL34Q8N239 644 aa8.98□□□□□ -0.97
MSH2-205ENST00000467323 NPM1P06748 294 aaKnown RBP eCLIP8.97□□□□□ -0.97
MSH2-205ENST00000467323 NBR1Q14596 966 aa8.95□□□□□ -0.98
MSH2-205ENST00000467323 ERICH6Q7L0X2 663 aa8.95□□□□□ -0.98
MSH2-205ENST00000467323 TSHZ2Q9NRE2 1034 aa8.92□□□□□ -0.98
MSH2-205ENST00000467323 TIMELESSQ9UNS1 1208 aa8.9□□□□□ -0.98
MSH2-205ENST00000467323 TULP1O00294 542 aaPredicted RBP8.89□□□□□ -0.99
MSH2-205ENST00000467323 ARXQ96QS3 562 aa8.89□□□□□ -0.99
MSH2-205ENST00000467323 RGL2O15211 777 aa8.86□□□□□ -0.99
MSH2-205ENST00000467323 GTF3C3Q9Y5Q9 886 aa8.86□□□□□ -0.99
MSH2-205ENST00000467323 DAXXQ9UER7 740 aaPredicted RBP8.85□□□□□ -0.99
MSH2-205ENST00000467323 STAG3Q9UJ98 1225 aa8.84□□□□□ -0.99
MSH2-205ENST00000467323 DNAJC5Q9H3Z4 198 aa8.83□□□□□ -1
MSH2-205ENST00000467323 CHGAP10645 457 aaKnown RBP8.81□□□□□ -1
MSH2-205ENST00000467323 POLA2Q14181 598 aa8.8□□□□□ -1
MSH2-205ENST00000467323 PLCD3Q8N3E9 789 aa8.8□□□□□ -1
MSH2-205ENST00000467323 ZBTB12Q9Y330 459 aaPredicted RBP8.79□□□□□ -1
MSH2-205ENST00000467323 TRHP20396 242 aaPredicted RBP8.77□□□□□ -1.01
MSH2-205ENST00000467323 TMEM132AQ24JP5 1023 aa8.73□□□□□ -1.01
MSH2-205ENST00000467323 TRIM41Q8WV44 630 aa8.72□□□□□ -1.01
MSH2-205ENST00000467323 CIZ1Q9ULV3 898 aaPredicted RBP8.72□□□□□ -1.01
MSH2-205ENST00000467323 MIER1Q8N108 512 aa8.71□□□□□ -1.02
MSH2-205ENST00000467323 HS6ST3Q8IZP7 471 aa8.7□□□□□ -1.02
MSH2-205ENST00000467323 ZBTB47Q9UFB7 747 aaPredicted RBP8.7□□□□□ -1.02
MSH2-205ENST00000467323 PLEKHG5O94827 1062 aa8.68□□□□□ -1.02
MSH2-205ENST00000467323 HOMEZQ8IX15 550 aa8.68□□□□□ -1.02
MSH2-205ENST00000467323 SPINK5Q9NQ38 1064 aaPredicted RBP8.66□□□□□ -1.02
MSH2-205ENST00000467323 ZNF692Q9BU19 519 aaPredicted RBP8.65□□□□□ -1.02
MSH2-205ENST00000467323 CAPN15O75808 1086 aa8.64□□□□□ -1.03
MSH2-205ENST00000467323 C14orf37Q86TY3 774 aa8.63□□□□□ -1.03
MSH2-205ENST00000467323 SPDYE2BA6NHP3 402 aa8.57□□□□□ -1.04
MSH2-205ENST00000467323 SPDYE6P0CI01 402 aa8.57□□□□□ -1.04
MSH2-205ENST00000467323 SPDYE2Q495Y8 402 aa8.57□□□□□ -1.04
MSH2-205ENST00000467323 SSUH2Q9Y2M2 353 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms