RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MC3RP41968 323 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CCNJQ5T5M9 372 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CHST3Q7LGC8 479 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ILDR1Q86SU0 546 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 VRK2Q86Y07 508 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 EBNA1BP2Q99848 306 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SPXQ9BT56 116 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PI4K2AQ9BTU6 479 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 WRAP53Q9BUR4 548 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PCED1AQ9H1Q7 454 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM39AQ9NV64 488 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NXF1Q9UBU9 619 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ADAMTS6Q9UKP5 1117 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MAP4K5Q9Y4K4 846 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NPC1L1Q9UHC9 1359 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CIB4A0PJX0 185 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SERPINE3A8MV23 424 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 EFCAB9A8MZ26 197 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RAD17O75943 681 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RCBTB2O95199 551 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 APOC3P02656 99 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MGAT1P26572 445 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 HTR7P34969 479 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MTM1Q13496 603 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 LARS2Q15031 903 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TRIP10Q15642 601 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TDRD10Q5VZ19 366 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SYCE2Q6PIF2 218 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 THSD4Q6ZMP0 1018 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 VASH2Q86V25 355 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ADGRF4Q8IZF3 695 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ST6GALNAC3Q8NDV1 305 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FSD1LQ9BXM9 530 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CIPCQ9C0C6 399 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RXFP1Q9HBX9 757 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CRTAC1Q9NQ79 661 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF222Q9UK12 451 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 COPS3Q9UNS2 423 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PKP3Q9Y446 797 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 KLK4Q9Y5K2 254 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RLFQ13129 1914 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CBX4O00257 560 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ENO3P13929 434 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ANXA7P20073 488 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PVALBP20472 110 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PROZP22891 400 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FSHRP23945 695 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NRG3P56975 720 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SPCS3P61009 180 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CSNK2A1P68400 391 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 HTD2P86397 168 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CCZ1BP86790 482 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CCZ1P86791 482 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PIP5KL1Q5T9C9 394 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GPR137CQ8N3F9 429 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TRAM1L1Q8N609 369 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CSNK2A3Q8NEV1 391 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 KCNJ9Q92806 393 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CCM2Q9BSQ5 444 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FAM217BQ9NTX9 383 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 USP18Q9UMW8 372 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GAB2Q9UQC2 676 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SCN9AQ15858 1988 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 KIF21AQ7Z4S6 1674 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 A0A1B0GWJ7 208 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CLN5O75503 358 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 COX5BP10606 129 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CDH5P33151 784 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ADGRD1Q6QNK2 874 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FRMD7Q6ZUT3 714 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 USP43Q70EL4 1123 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SERPINA12Q8IW75 414 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SETD9Q8NE22 299 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FAM46BQ96A09 425 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ITPKCQ96DU7 683 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM2Q99965 735 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PUS7LQ9H0K6 701 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZDHHC6Q9H6R6 413 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 POLR1BQ9H9Y6 1135 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 C1GALT1Q9NS00 363 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GLTPQ9NZD2 209 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM22Q9P0K1 906 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CDH9Q9ULB4 789 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CACNG2Q9Y698 323 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 AOX1Q06278 1338 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SOS2Q07890 1332 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 LRRN3E7EW58 273 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PF4P02776 101 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ARP10275 920 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SLC5A2P31639 672 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 VIPR2P41587 438 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 OR3A3P47888 321 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NAPRTQ6XQN6 538 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TGIF2LXQ8IUE1 241 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 STK40Q8N2I9 435 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 LKAAEAR1Q8TD35 194 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PGAP3Q96FM1 320 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 OXNAD1Q96HP4 312 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MTERF1Q99551 399 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms