RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DNAJC22Q8N4W6 341 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 CCDC110Q8TBZ0 833 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 ACTL9Q8TC94 416 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 KRT35Q92764 455 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 FAM118BQ9BPY3 351 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 CHRNA10Q9GZZ6 450 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 SLC6A20Q9NP91 592 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 SLC22A11Q9NSA0 550 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 SMARCAL1Q9NZC9 954 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 PLCL2Q9UPR0 1127 aa18.68■□□□□ 0.58
CLN3-262ENST00000637699 ISM1B1AKI9 464 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 KCNN4O15554 427 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 MFAP3LO75121 409 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 STK10O94804 968 aaKnown RBP18.67■□□□□ 0.58
CLN3-262ENST00000637699 OTUD4Q01804 1114 aaKnown RBP18.67■□□□□ 0.58
CLN3-262ENST00000637699 PRAMEF13Q5VWM6 474 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 NAPRTQ6XQN6 538 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 PIANPQ8IYJ0 282 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 TBC1D21Q8IYX1 336 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 SLC34A3Q8N130 599 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 DNAJB14Q8TBM8 379 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 GRHL3Q8TE85 626 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 ELMO1Q92556 727 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 C19orf43Q9BQ61 176 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 TSPY26PQ9H489 355 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 OR6C2Q9NZP2 312 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 POLG2Q9UHN1 485 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 CDC23Q9UJX2 597 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 KLHL20Q9Y2M5 609 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLN3-262ENST00000637699 PRSS21Q9Y6M0 314 aa18.67■□□□□ 0.58
CLN3-262ENST00000637699 DOCK10Q96BY6 2186 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 SVILO95425 2214 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 ARHGAP10A1A4S6 786 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 LIN7AO14910 233 aaPredicted RBP18.66■□□□□ 0.58
CLN3-262ENST00000637699 SNRNP200O75643 2136 aaKnown RBP18.66■□□□□ 0.58
CLN3-262ENST00000637699 GSTM1P09488 218 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 TPH1P17752 444 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 MMP11P24347 488 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 ACADLP28330 430 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 PER3P56645 1201 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 EIF3EP60228 445 aaKnown RBP18.66■□□□□ 0.58
CLN3-262ENST00000637699 GSTM4Q03013 218 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 DBN1Q16643 649 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 AGAP7PQ5VUJ5 663 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 DARS2Q6PI48 645 aaKnown RBP18.66■□□□□ 0.58
CLN3-262ENST00000637699 TTLL10Q6ZVT0 673 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 CDKL3Q8IVW4 592 aaPredicted RBP18.66■□□□□ 0.58
CLN3-262ENST00000637699 PPP4R1Q8TF05 950 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 MARVELD3Q96A59 401 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 CNDP1Q96KN2 507 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 AGAP4Q96P64 663 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 ARNT2Q9HBZ2 717 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 NLE1Q9NVX2 485 aaPredicted RBP18.66■□□□□ 0.58
CLN3-262ENST00000637699 EURLQ9NYK6 297 aa18.66■□□□□ 0.58
CLN3-262ENST00000637699 E2F3O00716 465 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 CBFA2T2O43439 604 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 AP2A2O94973 939 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 RBP3P10745 1247 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 PRF1P14222 555 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 CTNNA2P26232 953 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 PEBP1P30086 187 aaKnown RBP18.65■□□□□ 0.58
CLN3-262ENST00000637699 HADHBP55084 474 aaKnown RBP18.65■□□□□ 0.58
CLN3-262ENST00000637699 CACNG1Q06432 222 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 CDC16Q13042 620 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 SLC5A12Q1EHB4 618 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 IRAK1BP1Q5VVH5 260 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 OVCH1Q7RTY7 1134 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 PARP9Q8IXQ6 854 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 RNF214Q8ND24 703 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 DLG3Q92796 817 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 CDKN2AIPNLQ96HQ2 116 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 SPATA13Q96N96 652 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 FEZ2Q9UHY8 353 aaPredicted RBP18.65■□□□□ 0.58
CLN3-262ENST00000637699 TFR2Q9UP52 801 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 ZGRF1Q86YA3 2104 aa18.65■□□□□ 0.58
CLN3-262ENST00000637699 PCM1Q15154 2024 aa18.64■□□□□ 0.58
CLN3-262ENST00000637699 CCDC78A2IDD5 438 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 BHMG1C9JSJ3 638 aaPredicted RBP18.64■□□□□ 0.57
CLN3-262ENST00000637699 H7C0S8 307 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 SOCS6O14544 535 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 HNRNPRO43390 633 aaKnown RBP18.64■□□□□ 0.57
CLN3-262ENST00000637699 ZG16O60844 167 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 ITGAXP20702 1163 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 MAGP20916 626 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 MAGEA1P43355 309 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 ZNF169Q14929 603 aaPredicted RBP18.64■□□□□ 0.57
CLN3-262ENST00000637699 KIR2DS3Q14952 304 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 ZRSR2Q15696 482 aaKnown RBP18.64■□□□□ 0.57
CLN3-262ENST00000637699 SYTL3Q4VX76 610 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 IGFL2Q6UWQ7 119 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 SHISA6Q6ZSJ9 500 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 TMTC1Q8IUR5 882 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 MCATQ8IVS2 390 aaKnown RBP18.64■□□□□ 0.57
CLN3-262ENST00000637699 VSTM4Q8IW00 320 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 OR5K2Q8NHB8 316 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 FAR1Q8WVX9 515 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.64■□□□□ 0.57
CLN3-262ENST00000637699 NACC2Q96BF6 587 aa18.64■□□□□ 0.57
CLN3-262ENST00000637699 LRRC45Q96CN5 670 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 141 ms