RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 HGSO14964 777 aaPredicted RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 SCAMP1O15126 338 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 KATNA1O75449 491 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 SKAP2O75563 359 aaPredicted RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 OR4F21O95013 312 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 THEGLP0DJG4 465 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 UROSP10746 265 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 CCNG1P51959 295 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 DMWDQ09019 674 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 GRB7Q14451 532 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 FAM219BQ5XKK7 198 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 YTHDF3Q7Z739 585 aaKnown RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 DEFB119Q8N690 84 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 PHC3Q8NDX5 983 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 OR4F6Q8NGB9 312 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 ZNF480Q8WV37 535 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 ATP6V1E2Q96A05 226 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 RAD51AP1Q96B01 352 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 PYCR2Q96C36 320 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 CDK15Q96Q40 435 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 OR52B2Q96RD2 323 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 INSM2Q96T92 566 aaPredicted RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 NUSAP1Q9BXS6 441 aaKnown RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 DNAJC11Q9NVH1 559 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 SPATA6Q9NWH7 488 aaPredicted RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 TRNAU1APQ9NX07 287 aaKnown RBP17.91■□□□□ 0.46
CLN3-254ENST00000637050 CIDEBQ9UHD4 219 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 LRP4O75096 1905 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 CCDC163A0A0D9SF12 145 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 EPHA3P29320 983 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CTBSQ01459 385 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CDC16Q13042 620 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 FZD2Q14332 565 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 UAP1L1Q3KQV9 507 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 RD3Q7Z3Z2 195 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CLNKQ7Z7G1 428 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 TBC1D21Q8IYX1 336 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CHCHD4Q8N4Q1 142 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 GBP7Q8N8V2 638 aaPredicted RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 TWIST2Q8WVJ9 160 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 ERP27Q96DN0 273 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 KLHDC7BQ96G42 594 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 PPP1R36Q96LQ0 422 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CCDC28BQ9BUN5 200 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 TMEM168Q9H0V1 697 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 TRIT1Q9H3H1 467 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 TCF7L2Q9NQB0 619 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 AASDHPPTQ9NRN7 309 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 INTS7Q9NVH2 962 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 SLC22A14Q9Y267 594 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CFAP20Q9Y6A4 193 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 ATXN2Q99700 1313 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 EML5Q05BV3 1969 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 GOLGA8QA0A0J9YX86 632 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 GOLGA8OA6NCC3 632 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 GOLGA8NF8WBI6 632 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 FCHO1O14526 889 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 DCXO43602 365 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CCDC22O60826 627 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CRCPO75575 148 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 ENO1P06733 434 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 SERPINA6P08185 405 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 EBLN1P0CF75 366 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 BCKDHBP21953 392 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 ITPKAP23677 461 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 EIF2B5Q13144 721 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 NAE1Q13564 534 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CLCA4Q14CN2 919 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 LSM12Q3MHD2 195 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 GALNTL6Q49A17 601 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 METTL21CQ5VZV1 264 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 WASH2PQ6VEQ5 465 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 ACAD11Q709F0 780 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 EFL1Q7Z2Z2 1120 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 MILR1Q7Z6M3 343 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 DCP2Q8IU60 420 aaKnown RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 HID1Q8IV36 788 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 CDYL2Q8N8U2 506 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 DCBLD1Q8N8Z6 715 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 SNX31Q8N9S9 440 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 MFSD2AQ8NA29 543 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 C12orf66Q96MD2 445 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 NMUR2Q9GZQ4 415 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 TUBB1Q9H4B7 451 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 WASH6PQ9NQA3 447 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 PRDM8Q9NQV8 689 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 PRMT8Q9NR22 394 aaPredicted RBP17.9■□□□□ 0.46
CLN3-254ENST00000637050 ZFP69BQ9UJL9 534 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 PCOLCE2Q9UKZ9 415 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 TIMM22Q9Y584 194 aa17.9■□□□□ 0.46
CLN3-254ENST00000637050 A0A1W2PR77 199 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 UBOX5O94941 541 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 RASGRP1O95267 797 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 TNFP01375 233 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 ERGP11308 486 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 SPDYAQ5MJ70 313 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 ABRAXAS1Q6UWZ7 409 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 CCDC121Q6ZUS5 278 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 THOC6Q86W42 341 aaKnown RBP17.89■□□□□ 0.45
CLN3-254ENST00000637050 LRRC56Q8IYG6 542 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms