RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 FBXO15Q8NCQ5 510 aaPredicted RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 ST13P5Q8NFI4 369 aaPredicted RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 CXorf40AQ8TE69 158 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 ZNF514Q96K75 400 aaPredicted RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 FOPNLQ96NB1 174 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 MYADMQ96S97 322 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 PCDHAC1Q9H158 963 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 TRIM39Q9HCM9 518 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 BATF3Q9NR55 127 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 CMTM6Q9NX76 183 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 HCN2Q9UL51 889 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 LINC01565O15544 149 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 MMP20O60882 483 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 LILRB5O75023 590 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 RSL1D1O76021 490 aaKnown RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 APODP05090 189 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 EPHX1P07099 455 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 VARSP26640 1264 aaKnown RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 EEFSECP57772 596 aaKnown RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 PFN3P60673 137 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 GTF2H3Q13889 308 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 TIGD2Q4W5G0 525 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 ATAT1Q5SQI0 421 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 RAET1GQ6H3X3 334 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 PDSS2Q86YH6 399 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 PLCD3Q8N3E9 789 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 GLB1L3Q8NCI6 653 aaPredicted RBP21.5■■□□□ 1.03
PNKP-220ENST00000627232 CATSPER1Q8NEC5 780 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 TMEM125Q96AQ2 219 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 SLC45A3Q96JT2 553 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 LRGUKQ96M69 825 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 ZBTB18Q99592 522 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 TRIM15Q9C019 465 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 RIMS3Q9UJD0 308 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 SLC22A14Q9Y267 594 aa21.5■■□□□ 1.03
PNKP-220ENST00000627232 PLK4O00444 970 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 SEC22BO75396 215 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 PDYNP01213 254 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 PEX2P28328 305 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 P2RY2P41231 377 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 PLOD1Q02809 727 aaPredicted RBP21.49■■□□□ 1.03
PNKP-220ENST00000627232 PCDH1Q08174 1060 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 ENPP2Q13822 863 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 CAPRIN1Q14444 709 aaKnown RBP21.49■■□□□ 1.03
PNKP-220ENST00000627232 CPSF6Q16630 551 aaKnown RBP eCLIP21.49■■□□□ 1.03
PNKP-220ENST00000627232 SGO1Q5FBB7 561 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 EEF1AKMT2Q5JPI9 291 aaKnown RBP21.49■■□□□ 1.03
PNKP-220ENST00000627232 LIPJQ5W064 366 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 LPCAT4Q643R3 524 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 IRGCQ6NXR0 463 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 FAM9CQ8IZT9 166 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 GOLM1Q8NBJ4 401 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 SELENOMQ8WWX9 145 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 LINC00615Q96LM1 132 aaPredicted RBP21.49■■□□□ 1.03
PNKP-220ENST00000627232 ELOVL6Q9H5J4 265 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 ZNHIT2Q9UHR6 403 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 FADS3Q9Y5Q0 445 aa21.49■■□□□ 1.03
PNKP-220ENST00000627232 C17orf113A0A1B0GUU1 675 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 VEGFDO43915 354 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 CAPNS1P04632 268 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 JUPP14923 745 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 PREPP48147 710 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 HMGCS1Q01581 520 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 KIAA0040Q15053 153 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 ITPRIPL2Q3MIP1 535 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 EGFLAMQ63HQ2 1017 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 PYCR2Q96C36 320 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 CHFRQ96EP1 664 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 KXD1Q9BQD3 176 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 ACPTQ9BZG2 426 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 ATG10Q9H0Y0 220 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 STOX2Q9P2F5 926 aaPredicted RBP21.48■■□□□ 1.03
PNKP-220ENST00000627232 FAM8A1Q9UBU6 413 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 GPR34Q9UPC5 381 aa21.48■■□□□ 1.03
PNKP-220ENST00000627232 AQP12BA6NM10 295 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 H3BM21 787 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 K7ESM1 405 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 NPC1O15118 1278 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 ACPPP15309 386 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 ITPKAP23677 461 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 SLC7A1P30825 629 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 ATXN3P54252 364 aaPredicted RBP21.47■■□□□ 1.03
PNKP-220ENST00000627232 CNTN1Q12860 1018 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 CHIT1Q13231 466 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 ANO7Q6IWH7 933 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 AGTRAPQ6RW13 159 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 THOC6Q86W42 341 aaKnown RBP21.47■■□□□ 1.03
PNKP-220ENST00000627232 AQP12AQ8IXF9 295 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 ADCY4Q8NFM4 1077 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 OR2T34Q8NGX1 318 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 OR2T3Q8NH03 318 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 N4BP2L2Q92802 583 aaPredicted RBP21.47■■□□□ 1.03
PNKP-220ENST00000627232 OR2AG1Q9H205 316 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 AP4S1Q9Y587 144 aa21.47■■□□□ 1.03
PNKP-220ENST00000627232 RFXAPO00287 272 aa21.46■■□□□ 1.03
PNKP-220ENST00000627232 AP1G1O43747 822 aa21.46■■□□□ 1.03
PNKP-220ENST00000627232 PRPS2P11908 318 aa21.46■■□□□ 1.03
PNKP-220ENST00000627232 LAMP2P13473 410 aa21.46■■□□□ 1.03
PNKP-220ENST00000627232 MAPK1P28482 360 aa21.46■■□□□ 1.03
PNKP-220ENST00000627232 PBLDP30039 288 aaPredicted RBP21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms