RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CARD6Q9BX69 1037 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 RAB11FIP5Q9BXF6 653 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 XKR8Q9H6D3 395 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 SLAMF7Q9NQ25 335 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 NDOR1Q9UHB4 597 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 PLCL2Q9UPR0 1127 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 TDRKHQ9Y2W6 561 aaKnown RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 ICE1Q9Y2F5 2266 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 SNRNP200O75643 2136 aaKnown RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 NOTCH2Q04721 2471 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 CNTRLQ7Z7A1 2325 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 HIVEP3Q5T1R4 2406 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 DDX3YO15523 660 aaKnown RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 KRT86O43790 486 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 SORBS2O94875 1100 aaKnown RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 FTCDO95954 541 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 S1PR4O95977 384 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 PDGFAP04085 211 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 PVRP15151 417 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 TTPAP49638 278 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 GDF10P55107 478 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 CHAF1BQ13112 559 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 PTCHD3Q3KNS1 767 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 ZNF385CQ66K41 422 aaPredicted RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 DCUN1D3Q8IWE4 304 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 SLC22A15Q8IZD6 547 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 MPP5Q8N3R9 675 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 ZBTB2Q8N680 514 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 CCDC89Q8N998 374 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 PPHLN1Q8NEY8 458 aaKnown RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 OR52K1Q8NGK4 314 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 OR13J1Q8NGT2 312 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 OR2Y1Q8NGV0 311 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 OR6P1Q8NGX9 317 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 HDAC10Q969S8 669 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 PANX3Q96QZ0 392 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 LRRC4CQ9HCJ2 640 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 CUEDC1Q9NWM3 386 aaPredicted RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 IRAK4Q9NWZ3 460 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 PAK5Q9P286 719 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 IFT80Q9P2H3 777 aaPredicted RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 ZNF148Q9UQR1 794 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 R3HDM2Q9Y2K5 976 aaKnown RBP11.5□□□□□ -0.57
UPF3B-204ENST00000619445 MAP4K5Q9Y4K4 846 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 FER1L5A0AVI2 2057 aa11.5□□□□□ -0.57
UPF3B-204ENST00000619445 RELNP78509 3460 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 SHANK1Q9Y566 2161 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 ISM1B1AKI9 464 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 BHMG1C9JSJ3 638 aaPredicted RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 PFDN6O15212 129 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 LIASO43766 372 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 KLF7O75840 302 aaPredicted RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 GOT2P00505 430 aaKnown RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 IFNB1P01574 187 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 PRSS56P0CW18 603 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 NAA25Q14CX7 972 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 OASLQ15646 514 aaKnown RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 NKAIN1Q4KMZ8 207 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 ZC3H12BQ5HYM0 836 aaKnown RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 TCTE1Q5JU00 501 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 PRAMEF17Q5VTA0 474 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 MLIPQ5VWP3 458 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 ARMC3Q5W041 872 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 JMJD6Q6NYC1 403 aaPredicted RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 MRGPREQ86SM8 312 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 LRRC6Q86X45 466 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 FDCSPQ8NFU4 85 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 COG1Q8WTW3 980 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 MAIP1Q8WWC4 291 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 FKBP10Q96AY3 582 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 PTERQ96BW5 349 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 GBP5Q96PP8 586 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 PSMG3-AS1Q96PY0 264 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 ETNK1Q9HBU6 452 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 EIF2B3Q9NR50 452 aaKnown RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 IL1RAPL1Q9NZN1 696 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 PACSIN2Q9UNF0 486 aaPredicted RBP11.49□□□□□ -0.57
UPF3B-204ENST00000619445 ZKSCAN5Q9Y2L8 839 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 TCAF1Q9Y4C2 921 aa11.49□□□□□ -0.57
UPF3B-204ENST00000619445 H3BMH7 237 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 PRMT5O14744 637 aaPredicted RBP11.48□□□□□ -0.57
UPF3B-204ENST00000619445 ZNF185O15231 689 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 GPC4O75487 556 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 AGFG2O95081 481 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 ALBP02768 609 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 APRTP07741 180 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 ITGAXP20702 1163 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 CD9P21926 228 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 CDC25BP30305 580 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 PKLRP30613 574 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 OTX2P32243 289 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 GABRA4P48169 554 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 SOX8P57073 446 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 HSPA14Q0VDF9 509 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 ATP1A4Q13733 1029 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 MYBPC3Q14896 1274 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 BRD3Q15059 726 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 CYP2A13Q16696 494 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 KYNUQ16719 465 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 NADK2Q4G0N4 442 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms