RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 H3BNH8 94 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 F2P00734 622 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 OPN1SWP03999 348 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF12P17014 697 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 STC1P52823 247 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 LAPTM5Q13571 262 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FRG2Q64ET8 278 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 BICRALQ6AI39 1079 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 OR4F3Q6IEY1 312 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FRG2BQ96QU4 278 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 POLR2J3Q9H1A7 115 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 TMEM27Q9HBJ8 222 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 ZCCHC3Q9NUD5 404 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF282Q9UDV7 671 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 SLC22A14Q9Y267 594 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 PCDHGB3Q9Y5G1 929 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 PEX16Q9Y5Y5 336 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 GPC6Q9Y625 555 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 LCHNA4D1U4 455 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 ARHGEF33A8MVX0 844 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FAM72CH0Y354 149 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 H7C0S8 307 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FZD9O00144 591 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 KHDRBS3O75525 346 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 CD36P16671 472 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 ZBED5Q49AG3 693 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FAM72AQ5TYM5 149 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 TXNDC8Q6A555 127 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FAM72DQ6L9T8 149 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FAM72BQ86X60 149 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 UBE2J2Q8N2K1 259 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 OR4F6Q8NGB9 312 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 C2orf15Q8WU43 125 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 CEP295NLQ96MC4 621 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 GPATCH1Q9BRR8 931 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 OR2AG1Q9H205 316 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 FNIP2Q9P278 1114 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 CYTH4Q9UIA0 394 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 A0A1W2PRU2 124 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 MPZL2O60487 215 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 RGS20O76081 388 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 CLIC3O95833 236 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 PCCBP05166 539 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 G6PDP11413 515 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 ANXA8P13928 327 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 PNLIPRP1P54315 467 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 CAP1Q01518 475 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 PDSS2Q86YH6 399 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 DNAJB8Q8NHS0 232 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 MOCOSQ96EN8 888 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 POLR2J2Q9GZM3 115 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 LIN28AQ9H9Z2 209 aaKnown RBP13.73□□□□□ -0.21
CPSF1-212ENST00000616140 TMLHEQ9NVH6 421 aa13.73□□□□□ -0.21
CPSF1-212ENST00000616140 MYH6P13533 1939 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 A0A1W2PRB8 838 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 EFCAB9A8MZ26 197 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 TGFB1P01137 390 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 VIPP01282 170 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 PRR5P85299 388 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SIX1Q15475 284 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SPANXN4Q5MJ08 99 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 POMZP3Q6PJE2 187 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 C15orf39Q6ZRI6 1047 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 GALNT13Q8IUC8 556 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ERI1Q8IV48 349 aaKnown RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 CADM2Q8N3J6 435 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 KREMEN2Q8NCW0 462 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 PDCD10Q9BUL8 212 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SLC32A1Q9H598 525 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 CHST10O43529 356 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 PGRP06401 933 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 DGKGP49619 791 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 PGGT1BP53609 377 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 DIO3P55073 304 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF33AQ06730 810 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 GANABQ14697 944 aaKnown RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 NPTX1Q15818 432 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 EMC10Q5UCC4 262 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 GDF6Q6KF10 455 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ERMP1Q7Z2K6 904 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ENDOVQ8N8Q3 282 aaKnown RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SMG8Q8ND04 991 aaKnown RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 KIAA1191Q96A73 305 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SLC7A6OSQ96CW6 309 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 CNPPD1Q9BV87 410 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 TRIT1Q9H3H1 467 aaKnown RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF221Q9UK13 617 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 LOC730098B7Z3J9 87 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SLC31A1O15431 190 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 CLDN7O95471 211 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 SDC2P34741 201 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 TPTEP56180 551 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 TARDBPQ13148 414 aaKnown RBP eCLIP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.72□□□□□ -0.212e-7■■■■■ 37.4
CPSF1-212ENST00000616140 GET4Q7L5D6 327 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 OR10G2Q8NGC3 310 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 NPLOC4Q8TAT6 608 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ZBED6CLQ96FA7 236 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 IL4I1Q96RQ9 567 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 VRTNQ9H8Y1 702 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms