RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FAM45BPQ6NSW5 357 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 ZYG11AQ6WRX3 759 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 CLRN3Q8NCR9 226 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 FAM45AQ8TCE6 357 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 AURKBQ96GD4 344 aaPredicted RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 ZSWIM3Q96MP5 696 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 SLC9A7Q96T83 725 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 NT5C1AQ9BXI3 368 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 NUSAP1Q9BXS6 441 aaKnown RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 FTHL17Q9BXU8 183 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 ZNF518BQ9C0D4 1074 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 ASB7Q9H672 318 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 PLAC1Q9HBJ0 212 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 ZBTB20Q9HC78 741 aaPredicted RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 ERVK13-1Q9NX77 482 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 VTI1BQ9UEU0 232 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 BAIAP2Q9UQB8 552 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 RAP2CQ9Y3L5 183 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 FKBP7Q9Y680 259 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 TRIP11Q15643 1979 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 PQLC2LA1A4F0 135 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 KHNYNO15037 678 aaKnown RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 GRID2O43424 1007 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 RECQL4O94761 1208 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 CYP11A1P05108 521 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 PFKMP08237 780 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 ARSFP54793 590 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 CD47Q08722 323 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 HKDC1Q2TB90 917 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 KLHL12Q53G59 568 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 SNX20Q7Z614 316 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 TRIM48Q8IWZ4 208 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 C9orf62Q8N4C0 152 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 OR6M1Q8NGM8 313 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 HYLS1Q96M11 299 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 GPR137Q96N19 417 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 FRMD6Q96NE9 622 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 TRNT1Q96Q11 434 aaKnown RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 PPIL3Q9H2H8 161 aaKnown RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 TNKS2Q9H2K2 1166 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 ABHD16BQ9H3Z7 469 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 SCN1AP35498 2009 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 A0A0A6YYJ9 748 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 MEIS3P2A8K0S8 358 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 NT5C1B-RDH14C9J2C7 533 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 SLCO1B7G3V0H7 640 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 MRASO14807 208 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 HS6ST1O60243 411 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 H2AFYO75367 372 aaKnown RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 RFPL3O75679 317 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 DARSP14868 501 aaKnown RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 CD36P16671 472 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 MAP2K4P45985 399 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 BRCC3P46736 316 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 NUBP1P53384 320 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 DAG1Q14118 895 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 SPATS1Q496A3 300 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 HSD17B12Q53GQ0 312 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 PITRM1Q5JRX3 1037 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 GNASQ5JWF2 1037 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 GLYATQ6IB77 296 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 ZNF425Q6IV72 752 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 LAYNQ6UX15 382 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 HACD2Q6Y1H2 254 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 GALNT10Q86SR1 603 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 TMC8Q8IU68 726 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 GOT1L1Q8NHS2 421 aaPredicted RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 TTLL2Q9BWV7 592 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 RSAD1Q9HA92 442 aa10.02□□□□□ -0.81
VPS39-214ENST00000614932 ZFR2Q9UPR6 939 aaKnown RBP10.02□□□□□ -0.81
VPS39-214ENST00000614932 ANK1P16157 1881 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 RPS10-NUDT3A0A1W2PQS6 291 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 KPNA7A9QM74 516 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 STX16O14662 325 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 TRUB2O95900 331 aaKnown RBP10.01□□□□□ -0.81
VPS39-214ENST00000614932 SLC2A4P14672 509 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 FSHRP23945 695 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 PSMA3P25788 255 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 NUP62P37198 522 aaPredicted RBP10.01□□□□□ -0.81
VPS39-214ENST00000614932 CSKP41240 450 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 ADAM15Q13444 863 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 GRB14Q14449 540 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 RUNDC3AQ59EK9 446 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 ARMCX4Q5H9R4 360 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 LAIR2Q6ISS4 152 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 C8orf82Q6P1X6 216 aaPredicted RBP10.01□□□□□ -0.81
VPS39-214ENST00000614932 CASC4Q6P4E1 433 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 TRMT10BQ6PF06 316 aaKnown RBP10.01□□□□□ -0.81
VPS39-214ENST00000614932 C5orf46Q6UWT4 87 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 CCDC190Q86UF4 302 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 KRT73Q86Y46 540 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 ZDHHC13Q8IUH4 622 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 RDH10Q8IZV5 341 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 VWA5B2Q8N398 1253 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 CAMKK1Q8N5S9 505 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 ZNF555Q8NEP9 628 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 AP2M1Q96CW1 435 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 MOGAT1Q96PD6 335 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 SLC22A4Q9H015 551 aa10.01□□□□□ -0.81
VPS39-214ENST00000614932 POLE3Q9NRF9 147 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms