RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FOLR3P41439 243 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 GRIA1P42261 906 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 CDH17Q12864 832 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 KLF1Q13351 362 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 EIF2S3LQ2VIR3 472 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 C4orf17Q53FE4 359 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 LDB1Q86U70 411 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 SPC24Q8NBT2 197 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 OR5K2Q8NHB8 316 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 PSMG3-AS1Q96PY0 264 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 DPH2Q9BQC3 489 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 CASS4Q9NQ75 786 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF148Q9UQR1 794 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 AP1M2Q9Y6Q5 423 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 SLC5A10A0PJK1 596 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 HEATR9A2RTY3 570 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 IQCF5A8MTL0 148 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 ZSCAN9O15535 394 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 KRT86O43790 486 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 CEACAM4O75871 244 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 MSL3P1P0C860 447 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 DCDP81605 110 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 MRPL49Q13405 166 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 FASTKD1Q53R41 847 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 TSTD2Q5T7W7 516 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 SEL1L2Q5TEA6 688 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 LYPLAL1Q5VWZ2 237 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 AFTPHQ6ULP2 937 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 PACS1Q6VY07 963 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 MRGPREQ86SM8 312 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 TMEM151BQ8IW70 566 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 KRT222Q8N1A0 295 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 RBMXL3Q8N7X1 1067 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 OR13J1Q8NGT2 312 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 OR4L1Q8NH43 312 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 PRR7Q8TB68 274 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 IL17FQ96PD4 163 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 NDC1Q9BTX1 674 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 OR6C2Q9NZP2 312 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 FER1L5A0AVI2 2057 aa16.95■□□□□ 0.3
SHKBP1-223ENST00000600552 USP9YO00507 2555 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 ICE1Q9Y2F5 2266 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 SHANK1Q9Y566 2161 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 F8W8V4 182 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 KDM1AO60341 852 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 KLF7O75840 302 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 SORBS2O94875 1100 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 PEBP1P30086 187 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 CCR7P32248 378 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 GRIA3P42263 894 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 PRAMEP78395 509 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 SSPNQ14714 243 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 PAPD7Q5XG87 772 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 ZNF385CQ66K41 422 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 SLC6A19Q695T7 634 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 VRK3Q8IV63 474 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 TXLNBQ8N3L3 684 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 GLIS1Q8NBF1 620 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 FLVCR1-AS1Q8TAF5 88 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 LKAAEAR1Q8TD35 194 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 SKA2Q8WVK7 121 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 C19orf60Q96EN9 201 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 ZNF778Q96MU6 729 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 GBP5Q96PP8 586 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 DHRS4Q9BTZ2 278 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 RAB6BQ9NRW1 208 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 TSR3Q9UJK0 312 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 ANAPC5Q9UJX4 755 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 PLCL2Q9UPR0 1127 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 PCDHGB7Q9Y5F8 929 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 USP9XQ93008 2570 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 PCSK5Q92824 1860 aa16.94■□□□□ 0.3
SHKBP1-223ENST00000600552 SPTBN1Q01082 2364 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 A1L4Q6 167 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 LIASO43766 372 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 SEMA7AO75326 666 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 MAGP20916 626 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 ADRA1DP25100 572 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 FDFT1P37268 417 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 GABRA4P48169 554 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 PLOD1Q02809 727 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 SEMA3AQ14563 771 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 KIR2DS3Q14952 304 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 PLEKHN1Q494U1 663 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 NKAIN1Q4KMZ8 207 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 RHBDD2Q6NTF9 364 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 TLDC1Q6P9B6 456 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 TTLL10Q6ZVT0 673 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 DNAJC22Q8N4W6 341 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 CISD2Q8N5K1 135 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 OTUD6BQ8N6M0 293 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 CCDC89Q8N998 374 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 Q8NA96 180 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 CLEC1AQ8NC01 280 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 FER1L6-AS2Q96M78 137 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 C17orf62Q9BQA9 187 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 TSSK1BQ9BXA7 367 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 AP1M1Q9BXS5 423 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 P4HTMQ9NXG6 502 aa16.93■□□□□ 0.3
SHKBP1-223ENST00000600552 EURLQ9NYK6 297 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms