RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PPP2R3CQ969Q6 453 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 TIFAQ96CG3 184 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 PPM1MQ96MI6 270 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 BATF3Q9NR55 127 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 DLGAP4Q9Y2H0 992 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 DOCK9Q9BZ29 2069 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 EDDM13A0A1B0GTR0 161 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SLC5A10A0PJK1 596 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SLC28A1O00337 649 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 KPNA5O15131 536 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 TIPRLO75663 272 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 PAPLNO95428 1278 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 GSTM1P09488 218 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 C6P13671 934 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 ADRB3P13945 408 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 UQCRBP14927 111 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 PSMC3P17980 439 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 JAK1P23458 1154 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 NFKBIAP25963 317 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 VARSP26640 1264 aaKnown RBP14.09□□□□□ -0.15
VRK3-217ENST00000599538 GSTM4Q03013 218 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 LIPEQ05469 1076 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 FOXM1Q08050 763 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SP140Q13342 867 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 ELAVL3Q14576 367 aaKnown RBP14.09□□□□□ -0.15
VRK3-217ENST00000599538 RALGPS2Q86X27 583 aaPredicted RBP14.09□□□□□ -0.15
VRK3-217ENST00000599538 LMNTD1Q8N9Z9 388 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 TMIEQ8NEW7 156 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 OR2T34Q8NGX1 318 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 OR2T3Q8NH03 318 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SELENOMQ8WWX9 145 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 NKX2-4Q9H2Z4 354 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 VCX3BQ9H321 246 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 ALG2Q9H553 416 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 DLGAP2Q9P1A6 1054 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 DPPA5A6NC42 116 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 ARPC2O15144 300 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SLC16A5O15375 505 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 ATG13O75143 517 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 PSIP1O75475 530 aaKnown RBP14.09□□□□□ -0.15
VRK3-217ENST00000599538 CAPNS1P04632 268 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 ZCCHC18P0CG32 403 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 OXTRP30559 389 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SLC7A1P30825 629 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 HNMTP50135 292 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 MTPNP58546 118 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 FAM174BQ3ZCQ3 159 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SYTL3Q4VX76 610 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 XKR5Q6UX68 686 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 NEK10Q6ZWH5 1172 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 GALNT4Q8N4A0 578 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 CHCHD4Q8N4Q1 142 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 TMEM159Q96B96 161 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 CCM2Q9BSQ5 444 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 SLC29A3Q9BZD2 475 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 OR2AG1Q9H205 316 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 RAD18Q9NS91 495 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 DNAJC11Q9NVH1 559 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 PCDHGB4Q9UN71 923 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 PCDHGB5Q9Y5G0 923 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 PCYT1BQ9Y5K3 369 aaPredicted RBP14.09□□□□□ -0.15
VRK3-217ENST00000599538 SNX13Q9Y5W8 968 aa14.09□□□□□ -0.15
VRK3-217ENST00000599538 A6NHS1 94 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 PSMD11O00231 422 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 NPC1O15118 1278 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 LILRB5O75023 590 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 B3GALT4O96024 378 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 BCKDHAP12694 445 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 TACR1P25103 407 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 GJA4P35212 333 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 HALP42357 657 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 WASP42768 502 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 AP1S2P56377 157 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 FOLH1Q04609 750 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 CHIT1Q13231 466 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 ZNF658BQ4V348 819 aaPredicted RBP14.08□□□□□ -0.16
VRK3-217ENST00000599538 USP39Q53GS9 565 aaKnown RBP14.08□□□□□ -0.16
VRK3-217ENST00000599538 MTX3Q5HYI7 312 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 SPANXN4Q5MJ08 99 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 RAET1GQ6H3X3 334 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 SYCE2Q6PIF2 218 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 RNF165Q6ZSG1 346 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 NLRP8Q86W28 1048 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 NRSN1Q8IZ57 195 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 TCAIMQ8N3R3 496 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 DPP10Q8N608 796 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 L3MBTL4Q8NA19 623 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 ICA1LQ8NDH6 482 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 FBXL8Q96CD0 374 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 NUS1Q96E22 293 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 DUS3LQ96G46 650 aaKnown RBP14.08□□□□□ -0.16
VRK3-217ENST00000599538 OR4K3Q96R72 315 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 C1orf109Q9NX04 203 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 VAPAQ9P0L0 249 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 EIF3LQ9Y262 564 aaKnown RBP14.08□□□□□ -0.16
VRK3-217ENST00000599538 KIAA1549LQ6ZVL6 1849 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 H0Y858 1186 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 ARNTLO00327 626 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 TXNDC9O14530 226 aa14.08□□□□□ -0.16
VRK3-217ENST00000599538 LIN7AO14910 233 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms