RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TRBV5-4A0A0C4DH59 114 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ANKUB1A6NFN9 424 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 H7C0S8 307 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 LIASO43766 372 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 OR2B3O76000 313 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 AP2A1O95782 977 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 CBSLP0DN79 551 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 CBSP35520 551 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 FOLR3P41439 243 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 GABRA4P48169 554 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 DCDP81605 110 aaKnown RBP12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ELOAQ14241 798 aaKnown RBP12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ZNF787Q6DD87 383 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ZNF662Q6ZS27 426 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 Q6ZS92 163 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 SLC13A5Q86YT5 568 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ZADH2Q8N4Q0 377 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 OR2Y1Q8NGV0 311 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 C1orf54Q8WWF1 131 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 NACC2Q96BF6 587 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 GBP5Q96PP8 586 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 AP1M1Q9BXS5 423 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 TSGA10Q9BZW7 698 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ILKAPQ9H0C8 392 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-212ENST00000597995 KLHL25Q9H0H3 589 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 FAM60AQ9NP50 221 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 P4HTMQ9NXG6 502 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 SRPK3Q9UPE1 567 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 PTRH2Q9Y3E5 179 aaKnown RBP12.08□□□□□ -0.48
TRIM28-212ENST00000597995 COPG1Q9Y678 874 aaKnown RBP12.08□□□□□ -0.48
TRIM28-212ENST00000597995 CRYBG3Q68DQ2 2970 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 CCDC88CQ9P219 2028 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 ZNF189O75820 626 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-212ENST00000597995 AP2A2O94973 939 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 PTMAP06454 111 aaKnown RBP12.07□□□□□ -0.48
TRIM28-212ENST00000597995 ETS1P14921 441 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 UGT2B7P16662 529 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 PSMA3P25788 255 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 ACRV1P26436 265 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 COL8A1P27658 744 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 MC4RP32245 332 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 SHMT2P34897 504 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 GRIA1P42261 906 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 CCZ1BP86790 482 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 CCZ1P86791 482 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-212ENST00000597995 PRKG2Q13237 762 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 POU6F1Q14863 301 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 P3H1Q32P28 736 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 MRPL14Q6P1L8 145 aaKnown RBP12.07□□□□□ -0.48
TRIM28-212ENST00000597995 TLDC1Q6P9B6 456 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 UNC5AQ6ZN44 842 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 SERPINA9Q86WD7 417 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 LRRC8AQ8IWT6 810 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 PIANPQ8IYJ0 282 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 TBC1D21Q8IYX1 336 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 LRRC45Q96CN5 670 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 OR2A14Q96R47 310 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 RANBP9Q96S59 729 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 NRTNQ99748 197 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 HGH1Q9BTY7 390 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 SPRTNQ9H040 489 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-212ENST00000597995 XKR8Q9H6D3 395 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 LRRC40Q9H9A6 602 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 ETNK1Q9HBU6 452 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 ATP13A2Q9NQ11 1180 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 OR6C2Q9NZP2 312 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 IFT80Q9P2H3 777 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-212ENST00000597995 NDOR1Q9UHB4 597 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 POLG2Q9UHN1 485 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 ICKQ9UPZ9 632 aa12.07□□□□□ -0.48
TRIM28-212ENST00000597995 MROH6A6NGR9 719 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 GOLGA6L6A8MZA4 724 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 QSOX1O00391 747 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 LIN7AO14910 233 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-212ENST00000597995 ZSCAN9O15535 394 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-212ENST00000597995 CHRM5P08912 532 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-212ENST00000597995 STIP1P31948 543 aaKnown RBP12.06□□□□□ -0.48
TRIM28-212ENST00000597995 SNX1Q13596 522 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 ZIC1Q15915 447 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 KCTD19Q17RG1 926 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-212ENST00000597995 NKAIN1Q4KMZ8 207 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 SEL1L2Q5TEA6 688 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 C1orf189Q5VU69 101 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 TICAM1Q8IUC6 712 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 OR52K1Q8NGK4 314 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 CDKN2AIPNLQ96HQ2 116 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 LZTFL1Q9NQ48 299 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 AGPAT4Q9NRZ5 378 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 TXLNGQ9NUQ3 528 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 NLE1Q9NVX2 485 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-212ENST00000597995 PCDHGA10Q9Y5H3 936 aa12.06□□□□□ -0.48
TRIM28-212ENST00000597995 A0A0J9YY10 115 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 CCDC78A2IDD5 438 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 OR51F1A6NGY5 319 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 AGPSO00116 658 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 PSMD3O43242 534 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 HCRTR1O43613 425 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 CNOT3O75175 753 aaKnown RBP12.05□□□□□ -0.48
TRIM28-212ENST00000597995 IFNB1P01574 187 aa12.05□□□□□ -0.48
TRIM28-212ENST00000597995 UMODP07911 640 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms