RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 DNAJB8Q8NHS0 232 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 CCDC110Q8TBZ0 833 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 TFGQ92734 400 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-210ENST00000597618 ULK4Q96C45 1275 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 MRGPRX2Q96LB1 330 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 COPS8Q99627 209 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 FSD1LQ9BXM9 530 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 MAK16Q9BXY0 300 aaKnown RBP9.73□□□□□ -0.85
TRIM28-210ENST00000597618 SOX17Q9H6I2 414 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-210ENST00000597618 RTN4Q9NQC3 1192 aaKnown RBP9.73□□□□□ -0.85
TRIM28-210ENST00000597618 EURLQ9NYK6 297 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 OR6C2Q9NZP2 312 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 CTTNBP2NLQ9P2B4 639 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 CRLS1Q9UJA2 301 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 SH3BGRL2Q9UJC5 107 aa9.73□□□□□ -0.85
TRIM28-210ENST00000597618 ANKRD12Q6UB98 2062 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 C2orf81A6NN90 581 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 SLC19A2O60779 497 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ESRRAP11474 423 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ATP1B2P14415 290 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ACPPP15309 386 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 NFKB1P19838 968 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 CD68P34810 354 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 CARSP49589 748 aaKnown RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ADORA2A-AS1P86434 159 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 FANCCQ00597 558 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 TLE4Q04727 773 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 MPP3Q13368 585 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 PTPRCAPQ14761 206 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 STX1AQ16623 288 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 FILIP1LQ4L180 1135 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ZNF658BQ4V348 819 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 YOD1Q5VVQ6 348 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 SASS6Q6UVJ0 657 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 NPNTQ6UXI9 565 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 RBM43Q6ZSC3 357 aaKnown RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 SHISA6Q6ZSJ9 500 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 COX15Q7KZN9 410 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 CEP97Q8IW35 865 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 KBTBD2Q8IY47 623 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 IPMKQ8NFU5 416 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 FLVCR1-AS1Q8TAF5 88 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 MTFMTQ96DP5 389 aaKnown RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 SPOCK3Q9BQ16 436 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 CRB3Q9BUF7 120 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 MCCC2Q9HCC0 563 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ZNF160Q9HCG1 818 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 SPHK1Q9NYA1 384 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 CHMP5Q9NZZ3 219 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 UVRAGQ9P2Y5 699 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 CTSFQ9UBX1 484 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 FKBPLQ9UIM3 349 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 MRPS2Q9Y399 296 aaKnown RBP9.72□□□□□ -0.85
TRIM28-210ENST00000597618 ARL5AQ9Y689 179 aa9.72□□□□□ -0.85
TRIM28-210ENST00000597618 C3orf70A6NLC5 250 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 AGAP14A8MT82 685 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 C19orf84I3L1E1 186 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 MAP2K7O14733 419 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 DSCR3O14972 297 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 KDM1AO60341 852 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 RASAL1O95294 804 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 CLDN14O95500 239 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 UQCRHP07919 91 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 GSTM1P09488 218 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 ITGALP20701 1170 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 MST1P26927 711 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 PDHA2P29803 388 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 SOX11P35716 441 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 DYNLT1P63172 113 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 GSTM4Q03013 218 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 WASHC5Q12768 1159 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 KIR2DS3Q14952 304 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 TAF1AQ15573 450 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 ALKBH5Q6P6C2 394 aaKnown RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 BZW1Q7L1Q6 419 aaKnown RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 NLRP9Q7RTR0 991 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 RFX6Q8HWS3 928 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 OR4K2Q8NGD2 314 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 OR5AR1Q8NGP9 310 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 TFB1MQ8WVM0 346 aaKnown RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 SYN2Q92777 582 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 HAS2Q92819 552 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 OXNAD1Q96HP4 312 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 FCRL5Q96RD9 977 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 CUTCQ9NTM9 273 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 PLA2G3Q9NZ20 509 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 IL1RAPL1Q9NZN1 696 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 PTGFRNQ9P2B2 879 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 KLHL8Q9P2G9 620 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 POLG2Q9UHN1 485 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 ASF1AQ9Y294 204 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 CCDC88CQ9P219 2028 aa9.71□□□□□ -0.86
TRIM28-210ENST00000597618 MAP1AP78559 2803 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-210ENST00000597618 A0A087X0T9 212 aa9.7□□□□□ -0.86
TRIM28-210ENST00000597618 C5orf60A6NFR6 353 aa9.7□□□□□ -0.86
TRIM28-210ENST00000597618 VSTM2BA6NLU5 285 aa9.7□□□□□ -0.86
TRIM28-210ENST00000597618 ISM1B1AKI9 464 aa9.7□□□□□ -0.86
TRIM28-210ENST00000597618 FANCGO15287 622 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms