RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 MT-CO3P00414 261 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 CTSEP14091 401 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 LSSP48449 732 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 HK3P52790 923 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 PGGT1BP53609 377 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 NXPH1P58417 271 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 IRF9Q00978 393 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 TIAL1Q01085 375 aaKnown RBP eCLIP11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC18A2Q05940 514 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 ILF3Q12906 894 aaKnown RBP eCLIP11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 PRAMEF14Q5SWL7 426 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 NAPRTQ6XQN6 538 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 CCDC81Q6ZN84 652 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 CFAP206Q8IYR0 622 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 PHACTR4Q8IZ21 702 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 FAM26EQ8N5C1 309 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 EID2Q8N6I1 236 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 EEF1AKMT1Q8WVE0 214 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 KCTD4Q8WVF5 259 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 SCYL1Q96KG9 808 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 ELF4Q99607 663 aaPredicted RBP11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 DERL2Q9GZP9 239 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 NMRAL1Q9HBL8 299 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 KLC4Q9NSK0 619 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 NKIRAS1Q9NYS0 192 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 APOBEC3BQ9UH17 382 aaKnown RBP11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 DCDC2Q9UHG0 476 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 DOCK9Q9BZ29 2069 aa11.77□□□□□ -0.53
SHKBP1-213ENST00000597325 H3BQF6 201 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 BTN3A1O00481 513 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 SCAMP1O15126 338 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 PRPF4O43172 522 aaKnown RBP eCLIP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 ZWINTO95229 277 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 WISP3O95389 354 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC35G4P0C7Q5 338 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 JUNDP17535 347 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 CKMT2P17540 419 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 NR1D1P20393 614 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 ACP1P24666 158 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 CRHR1P34998 444 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 MAPK9P45984 424 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 PREPP48147 710 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 ATP6V0D1P61421 351 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 FOXK1P85037 733 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 DMPKQ09013 629 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 EIF2B5Q13144 721 aaKnown RBP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 RPA4Q13156 261 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 NFE2L1Q14494 772 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 ACSBG2Q5FVE4 666 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 CDCP2Q5VXM1 449 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 IGF2-ASQ6U949 168 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 NEK10Q6ZWH5 1172 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 C11orf96Q7Z7L8 435 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 CLEC14AQ86T13 490 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 CENPLQ8N0S6 344 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 BANPQ8N9N5 519 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 UBXN10Q96LJ8 280 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 FOPNLQ96NB1 174 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 GSDMCQ9BYG8 508 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 POLR1BQ9H9Y6 1135 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 TRNAU1APQ9NX07 287 aaKnown RBP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 ACSL5Q9ULC5 683 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 GRID1Q9ULK0 1009 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 RUVBL2Q9Y230 463 aaKnown RBP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 KCNK6Q9Y257 313 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 PCYT1BQ9Y5K3 369 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 LRP4O75096 1905 aa11.76□□□□□ -0.53
SHKBP1-213ENST00000597325 CSMD2Q7Z408 3487 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC5A10A0PJK1 596 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TMEM120BA0PK00 339 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 CCDC189A1A4V9 331 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 NPEPPSL1A6NEC2 478 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 PDZK1P1A8MUH7 402 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 IFRD1O00458 451 aaPredicted RBP11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TM9SF1O15321 606 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 GPC4O75487 556 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SLCO2B1O94956 709 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 FUCA1P04066 466 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 RBP1P09455 135 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 MPC1LP0DKB6 136 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 NME1P15531 152 aaKnown RBP11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 CREB1P16220 341 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TFEBP19484 476 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 IDSP22304 550 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 GMPRP36959 345 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ACTR1BP42025 376 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 GLRBP48167 497 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ACTR1AP61163 376 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 PPP2R2AP63151 447 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 GBX1Q14549 363 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ACAP2Q15057 778 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TCEA2Q15560 299 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 CCDC153Q494R4 210 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 ZNF542PQ5EBM4 170 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 TMEM207Q6UWW9 146 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 FAM83HQ6ZRV2 1179 aaPredicted RBP11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 SH2D5Q6ZV89 423 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 FRA10AC1Q70Z53 315 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 KANSL1Q7Z3B3 1105 aa11.75□□□□□ -0.53
SHKBP1-213ENST00000597325 PIWIL4Q7Z3Z4 852 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms