RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NMBRP28336 390 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 PTGIRP43119 386 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 PGDP52209 483 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 TERF1P54274 439 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 DEFB110Q30KQ9 67 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 FAM20CQ8IXL6 584 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 SLC22A15Q8IZD6 547 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 FAM26EQ8N5C1 309 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 C19orf47Q8N9M1 422 aaKnown RBP19.76■□□□□ 0.75
SHMT1-209ENST00000582653 CFAP61Q8NHU2 1237 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 TCTN2Q96GX1 697 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 CARD6Q9BX69 1037 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 SPRTNQ9H040 489 aaPredicted RBP19.76■□□□□ 0.75
SHMT1-209ENST00000582653 EIF2B3Q9NR50 452 aaKnown RBP19.76■□□□□ 0.75
SHMT1-209ENST00000582653 OR6C2Q9NZP2 312 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 TTLL8A6PVC2 850 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 ISM1B1AKI9 464 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 CD3EAPO15446 510 aaKnown RBP19.75■□□□□ 0.75
SHMT1-209ENST00000582653 GPC4O75487 556 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 CTSBP07858 339 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 ATXN8OSP0DMR3 200 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 PEBP1P30086 187 aaKnown RBP19.75■□□□□ 0.75
SHMT1-209ENST00000582653 CCZ1BP86790 482 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 CCZ1P86791 482 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-209ENST00000582653 ZNF385CQ66K41 422 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-209ENST00000582653 CES3Q6UWW8 571 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 MED25Q71SY5 747 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 GPR135Q8IZ08 494 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 C2orf73Q8N5S3 287 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-209ENST00000582653 ZBTB2Q8N680 514 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 TMEM102Q8N9M5 508 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-209ENST00000582653 PEX13Q92968 403 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 TREX1Q9NSU2 369 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 AP1M2Q9Y6Q5 423 aa19.75■□□□□ 0.75
SHMT1-209ENST00000582653 TCRBV7S3A2A0A539 114 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 F8W8V4 182 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 H3BMH7 237 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 MGAT1P26572 445 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 AOAHP28039 575 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 PPARGP37231 505 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-209ENST00000582653 GABRA4P48169 554 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 NPY2RP49146 381 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 TRIP13Q15645 432 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-209ENST00000582653 FAM198BQ6UWH4 519 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 TRIM58Q8NG06 486 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 MAIP1Q8WWC4 291 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 ASZ1Q8WWH4 475 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 N4BP2L2Q92802 583 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-209ENST00000582653 DHRS4Q9BTZ2 278 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 TTC7AQ9ULT0 858 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-209ENST00000582653 ZKSCAN5Q9Y2L8 839 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 KLHL20Q9Y2M5 609 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 ZNF451Q9Y4E5 1061 aa19.74■□□□□ 0.75
SHMT1-209ENST00000582653 A0A0J9YY10 115 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 PRMT5O14744 637 aaPredicted RBP19.73■□□□□ 0.75
SHMT1-209ENST00000582653 OR2B3O76000 313 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 TTPAP49638 278 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 GRB7Q14451 532 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 NCF4Q15080 339 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 NADK2Q4G0N4 442 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 DNAJC21Q5F1R6 531 aaKnown RBP19.73■□□□□ 0.75
SHMT1-209ENST00000582653 AARS2Q5JTZ9 985 aaKnown RBP19.73■□□□□ 0.75
SHMT1-209ENST00000582653 PTRHD1Q6GMV3 140 aaKnown RBP19.73■□□□□ 0.75
SHMT1-209ENST00000582653 C4orf22Q6V702 233 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 HPS6Q86YV9 775 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 PRELID2Q8N945 189 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 IL17FQ96PD4 163 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 C17orf62Q9BQA9 187 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 MENTQ9BUN1 341 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 TSSK1BQ9BXA7 367 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 IL22Q9GZX6 179 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 P2RY12Q9H244 342 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 SYBUQ9NX95 663 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 BFARQ9NZS9 450 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 SPTBP11277 2137 aa19.73■□□□□ 0.75
SHMT1-209ENST00000582653 C9J4A7 227 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 KDM1AO60341 852 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 VPS4BO75351 444 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 KLF7O75840 302 aaPredicted RBP19.72■□□□□ 0.75
SHMT1-209ENST00000582653 APOA4P06727 396 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 CD63P08962 238 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 CBSLP0DN79 551 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 PKLRP30613 574 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 CBSP35520 551 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 RRADP55042 308 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 SSPNQ14714 243 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 KYNUQ16719 465 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 C1orf189Q5VU69 101 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 RHBDD2Q6NTF9 364 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 LINC01555Q8NAE3 123 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 FDCSPQ8NFU4 85 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 CPT1CQ8TCG5 803 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 MFSD3Q96ES6 412 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 VPS4AQ9UN37 437 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 G3BP2Q9UN86 482 aaKnown RBP19.72■□□□□ 0.75
SHMT1-209ENST00000582653 PADI2Q9Y2J8 665 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 PPP2R2CQ9Y2T4 447 aa19.72■□□□□ 0.75
SHMT1-209ENST00000582653 GOLGA8KD6RF30 607 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 GOLGA8TH3BQL2 631 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 ZNF185O15231 689 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms