RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ELAC2Q9BQ52 826 aaKnown RBP24.41■■□□□ 1.5
SHMT1-207ENST00000580002 PSD3Q9NYI0 1048 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 FRYLO94915 3013 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 TMEM114B3SHH9 223 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 TMEM233B4DJY2 109 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 NPHS1O60500 1241 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 SH3BP2P78314 561 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 CLCQ05315 142 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 SIM2Q14190 667 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-207ENST00000580002 ZNF528Q3MIS6 628 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 PRR23BQ6ZRT6 265 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 CPLX4Q7Z7G2 160 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 TEX9Q8N6V9 391 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 LMX1AQ8TE12 382 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 PPP4R1Q8TF05 950 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 CNDP1Q96KN2 507 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 CCDC138Q96M89 665 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 C7orf26Q96N11 449 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 C1QTNF3Q9BXJ4 246 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 UCKL1Q9NWZ5 548 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 ZNF225Q9UK10 706 aa24.4■■□□□ 1.5
SHMT1-207ENST00000580002 TNRC6BQ9UPQ9 1833 aaKnown RBP24.39■■□□□ 1.5
SHMT1-207ENST00000580002 MYO1CO00159 1063 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 SLC19A1P41440 591 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 AP1S2P56377 157 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 NAE1Q13564 534 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 AGTRAPQ6RW13 159 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 GOLGA7Q7Z5G4 137 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 FBXO15Q8NCQ5 510 aaPredicted RBP24.39■■□□□ 1.5
SHMT1-207ENST00000580002 RFWD2Q8NHY2 731 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 PRR11Q96HE9 360 aaPredicted RBP24.39■■□□□ 1.5
SHMT1-207ENST00000580002 CDK15Q96Q40 435 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 XKR8Q9H6D3 395 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 INTS7Q9NVH2 962 aaKnown RBP24.39■■□□□ 1.5
SHMT1-207ENST00000580002 PCOLCE2Q9UKZ9 415 aa24.39■■□□□ 1.5
SHMT1-207ENST00000580002 A0A1B0GTW7 788 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 PATE3B3GLJ2 98 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 H2AFYO75367 372 aaKnown RBP24.39■■□□□ 1.49
SHMT1-207ENST00000580002 EPORP19235 508 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 GGT5P36269 586 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 SLC6A12P48065 614 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 ASPHQ12797 758 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 TERF2Q15554 542 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 OR52B6Q8NGF0 335 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 CAMK1GQ96NX5 476 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 MENTQ9BUN1 341 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 GSDMCQ9BYG8 508 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 TMCO1Q9UM00 188 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 SLC22A14Q9Y267 594 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 R4GN57 208 aa24.39■■□□□ 1.49
SHMT1-207ENST00000580002 KMT2EQ8IZD2 1858 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 STK16O75716 305 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 MTHFD1P11586 935 aaKnown RBP24.38■■□□□ 1.49
SHMT1-207ENST00000580002 BLKP51451 505 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 BNIP3Q12983 259 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 SUSD1Q6UWL2 747 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 WASH2PQ6VEQ5 465 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 C11orf74Q86VG3 221 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 DCUN1D3Q8IWE4 304 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 BCAS4Q8TDM0 211 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 UBTD2Q8WUN7 234 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 TRIT1Q9H3H1 467 aaKnown RBP24.38■■□□□ 1.49
SHMT1-207ENST00000580002 NOL11Q9H8H0 719 aaKnown RBP24.38■■□□□ 1.49
SHMT1-207ENST00000580002 NPHS2Q9NP85 383 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 WASH6PQ9NQA3 447 aa24.38■■□□□ 1.49
SHMT1-207ENST00000580002 WDR87Q6ZQQ6 2873 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 OR7A17O14581 309 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 F3P13726 295 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 CTSKP43235 329 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 FOXA1P55317 472 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 GTF2H2Q13888 395 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 CDKL4Q5MAI5 379 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 GTF2H2CQ6P1K8 395 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 IYDQ6PHW0 289 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 CUZD1Q86UP6 607 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 LRRC56Q8IYG6 542 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-207ENST00000580002 TBC1D21Q8IYX1 336 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 NAGSQ8N159 534 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 FAM46DQ8NEK8 389 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 MED8Q96G25 268 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 KCNA7Q96RP8 456 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 FIS1Q9Y3D6 152 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 PABPN1LA6NDY0 278 aaKnown RBP24.37■■□□□ 1.49
SHMT1-207ENST00000580002 SRRM3A6NNA2 597 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-207ENST00000580002 WDR47O94967 919 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 FAM107AO95990 144 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 TSTA3Q13630 321 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-207ENST00000580002 SHBQ15464 509 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 CCDC6Q16204 474 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 MAVSQ7Z434 540 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 SYVN1Q86TM6 617 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 CRLF3Q8IUI8 442 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 ZNF473Q8WTR7 871 aaKnown RBP24.37■■□□□ 1.49
SHMT1-207ENST00000580002 RAD51AP1Q96B01 352 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 OR4K3Q96R72 315 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 MID1IP1Q9NPA3 183 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 OPTCQ9UBM4 332 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 DCTN4Q9UJW0 460 aa24.37■■□□□ 1.49
SHMT1-207ENST00000580002 TNPO3Q9Y5L0 923 aaKnown RBP24.37■■□□□ 1.49
SHMT1-207ENST00000580002 PI4KAP42356 2102 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms