RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ITM2BQ9Y287 266 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 NBPF19A0A087WUL8 3843 aa9.96□□□□□ -0.82
SS18-210ENST00000578700 SCN8AQ9UQD0 1980 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 UNC13CQ8NB66 2214 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 A0A0G2JND7 137 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 G3V2L1 256 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PSMD11O00231 422 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 DNAJC6O75061 913 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 SNNO75324 88 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 CELA2BP08218 269 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 ELFN1P0C7U0 828 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 TPBGLP0DKB5 382 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 FGF3P11487 239 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 CTSEP14091 401 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 TIMP2P16035 220 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ZNF37AP17032 561 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 ITGB7P26010 798 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ACRV1P26436 265 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 NSG1P42857 185 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 HK2P52789 917 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 INHBCP55103 352 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 DCDC1P59894 354 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 CYP4F2P78329 520 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 OCRLQ01968 901 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PTSQ03393 145 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PTK2BQ14289 1009 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ACOX1Q15067 660 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PTPRRQ15256 657 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 CHRNA6Q15825 494 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ZNF549Q6P9A3 640 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ZCCHC23Q6ZST2 131 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PARS2Q7L3T8 475 aaKnown RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 TRPM8Q7Z2W7 1104 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PIWIL4Q7Z3Z4 852 aaKnown RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 TSPAN33Q86UF1 283 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 VASH2Q86V25 355 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ZSWIM9Q86XI8 627 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 RAVER1Q8IY67 606 aaKnown RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 NXPE1Q8N323 547 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 SPATA6LQ8N4H0 392 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 CCNYL1Q8N7R7 359 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 Q8N9G6 341 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 WDR48Q8TAF3 677 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 RHEBL1Q8TAI7 183 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 STAG3L4Q8TBR4 150 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PIWIL2Q8TC59 973 aaKnown RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 DTX3LQ8TDB6 740 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 LENG8Q96PV6 779 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 LRRC37BQ96QE4 947 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PANX3Q96QZ0 392 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 SPATA16Q9BXB7 569 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 WWP1Q9H0M0 922 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 TFB2MQ9H5Q4 396 aaKnown RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 SARS2Q9NP81 518 aaKnown RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 PCDH12Q9NPG4 1184 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 GPR27Q9NS67 375 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 IGSF5Q9NSI5 407 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 STARD5Q9NSY2 213 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 ZDHHC3Q9NYG2 299 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 KCNK4Q9NYG8 393 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 DCTN4Q9UJW0 460 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 PNMA8BQ9ULN7 279 aaPredicted RBP9.95□□□□□ -0.82
SS18-210ENST00000578700 RNF112Q9ULX5 631 aa9.95□□□□□ -0.82
SS18-210ENST00000578700 NBASA2RRP1 2371 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 TRBV5-4A0A0C4DH59 114 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 PABPN1LA6NDY0 278 aaKnown RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 LMO7DNF2Z398 122 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 SLCO1B7G3V0H7 640 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 QSOX1O00391 747 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 NTN3O00634 580 aaPredicted RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 TERTO14746 1132 aaKnown RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 SUV39H1O43463 412 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 TSPAN6O43657 245 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 NOBOXO60393 691 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 MMP20O60882 483 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 S100BP04271 92 aaPredicted RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 RPLP0P05388 317 aaKnown RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 OR56A5P0C7T3 313 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 PRSS56P0CW18 603 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 ITGB6P18564 788 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 ITIH1P19827 911 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 AKT1P31749 480 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 MLLT3P42568 568 aaPredicted RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 SPINT3P49223 89 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 CDKN1CP49918 316 aaPredicted RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 PDX1P52945 283 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 MAPK10P53779 464 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 DNAJB13P59910 316 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 PFN3P60673 137 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 NAA20P61599 178 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 TBR1Q16650 682 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 TECRLQ5HYJ1 363 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 LRRC73Q5JTD7 316 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 ZNF574Q6ZN55 896 aaPredicted RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 FRA10AC1Q70Z53 315 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 PIM3Q86V86 326 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 ZFAND4Q86XD8 727 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 PTRH1Q86Y79 214 aaKnown RBP9.94□□□□□ -0.82
SS18-210ENST00000578700 HID1Q8IV36 788 aa9.94□□□□□ -0.82
SS18-210ENST00000578700 NRSN1Q8IZ57 195 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms