RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GJC3Q8NFK1 279 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 ABHD11Q8NFV4 315 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 RP9Q8TA86 221 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 OCC1Q8TAD7 63 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 HEXDCQ8WVB3 486 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 ROBO4Q8WZ75 1007 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 SHC3Q92529 594 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 PTCD3Q96EY7 689 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 BSCL2Q96G97 398 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 NUDCD1Q96RS6 583 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 CTAGE1Q96RT6 745 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 CRACR2AQ9BSW2 395 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 PPIL3Q9H2H8 161 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 RWDD1Q9H446 243 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 MMRN2Q9H8L6 949 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 FANCFQ9NPI8 374 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 TMEM74BQ9NUR3 256 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 PRMT7Q9NVM4 692 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 SPASTQ9UBP0 616 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 TDRKHQ9Y2W6 561 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 SIRT4Q9Y6E7 314 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 MGAQ8IWI9 3026 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 BOD1L1Q8NFC6 3051 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 AHCTF1Q8WYP5 2266 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 SLC9B1P1A6NJY1 282 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 TRIM77I1YAP6 450 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 PTBP3O95758 552 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 LINC00271P0C7V0 271 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 NR2F6P10588 404 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 CYP2D6P10635 497 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 ETFAP13804 333 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 RPS2P15880 293 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 GNAZP19086 355 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 CDC25CP30307 473 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 IFNAR2P48551 515 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 SCNN1GP51170 649 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 PTENP60484 403 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 NAE1Q13564 534 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 KPNB1Q14974 876 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 SF3A2Q15428 464 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 TWISTNBQ3B726 338 aaPredicted RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 FAM98BQ52LJ0 330 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 IFI44LQ53G44 452 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 GLE1Q53GS7 698 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 KLHL26Q53HC5 615 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 C10orf76Q5T2E6 689 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 NHLRC1Q6VVB1 395 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 TRIM74Q86UV6 250 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 TRIM73Q86UV7 250 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 SGMS1Q86VZ5 419 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 RFX6Q8HWS3 928 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 FUKQ8N0W3 1084 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 POU5F2Q8N7G0 328 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 LINC01465Q8N7H1 131 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 VN1R2Q8NFZ6 395 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 OR4N2Q8NGD1 307 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 TRPC4APQ8TEL6 797 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 FAM168AQ92567 244 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 C5orf30Q96GV9 206 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 EGLN2Q96KS0 407 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 ALG8Q9BVK2 526 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 POMKQ9H5K3 350 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 MINDY3Q9H8M7 445 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 WDR6Q9NNW5 1121 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 POLE3Q9NRF9 147 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 DUSP22Q9NRW4 184 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 KLC4Q9NSK0 619 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS53-219ENST00000576019 SEMA5BQ9P283 1151 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 COPG2Q9UBF2 871 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 HPCAL4Q9UM19 191 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 SNX7Q9UNH6 387 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 ANGPTL3Q9Y5C1 460 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.66□□□□□ -1.5
VPS53-219ENST00000576019 MROH5Q6ZUA9 1318 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 MIA3Q5JRA6 1907 aa5.66□□□□□ -1.5
VPS53-219ENST00000576019 FN1P02751 2386 aaKnown RBP5.65□□□□□ -1.5
VPS53-219ENST00000576019 PDZD2O15018 2839 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 C5orf51A6NDU8 294 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 DDTLA6NHG4 134 aaPredicted RBP5.65□□□□□ -1.5
VPS53-219ENST00000576019 UNC119BA6NIH7 251 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 F5H6K3 240 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 VCYO14598 125 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 MSI1O43347 362 aaKnown RBP5.65□□□□□ -1.5
VPS53-219ENST00000576019 SLC28A2O43868 658 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 SELENOFO60613 162 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 CREG1O75629 220 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 TJP3O95049 919 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 SLC16A8O95907 504 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 ENO1P06733 434 aaKnown RBP5.65□□□□□ -1.5
VPS53-219ENST00000576019 ABHD2P08910 425 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 ETS1P14921 441 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 AHCYP23526 432 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 YWHAQP27348 245 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 IDUAP35475 653 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 HNRNPKP61978 463 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS53-219ENST00000576019 PPP2CBP62714 309 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 PPP2CAP67775 309 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 SIRPAP78324 504 aa5.65□□□□□ -1.5
VPS53-219ENST00000576019 SGCGQ13326 291 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms