RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZNF382Q96SR6 550 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 GSDMCQ9BYG8 508 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ATG10Q9H0Y0 220 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 MVB12BQ9H7P6 319 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 NOL11Q9H8H0 719 aaKnown RBP13.31□□□□□ -0.28
CCDC40-209ENST00000573474 KCNK13Q9HB14 408 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ZBTB26Q9HCK0 441 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 TBC1D29Q9UFV1 150 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 POLG2Q9UHN1 485 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 KLF15Q9UIH9 416 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 BDP1A6H8Y1 2624 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CACNA1IQ9P0X4 2223 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 A0A0G2JND7 137 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 KRT87PA6NCN2 255 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 PPP6CO00743 305 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 ZNF195O14628 629 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 GIPC1O14908 333 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 VILLO15195 856 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 HDAC3O15379 428 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 KATNA1O75449 491 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 WDR47O94967 919 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 ESRRBO95718 433 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 SLC16A8O95907 504 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 OTCP00480 354 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CSF2P04141 144 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CTSEP14091 401 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 JUNDP17535 347 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 IMPA1P29218 277 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 AFF3P51826 1226 aaKnown RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CCNG1P51959 295 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 C21orf59P57076 290 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 NAE1Q13564 534 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 KRT33BQ14525 404 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 ZXDCQ2QGD7 858 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 ZNF542PQ5EBM4 170 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 LYSMD4Q5XG99 296 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 PMS2CLQ68D20 193 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 SLC30A9Q6PML9 568 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 GPRIN3Q6ZVF9 776 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 SYVN1Q86TM6 617 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 SPATS2Q86XZ4 545 aaKnown RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CLYBLQ8N0X4 340 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 SNX31Q8N9S9 440 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 OR56A3Q8NH54 315 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CCL4L1Q8NHW4 92 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 ZNF480Q8WV37 535 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 ATP6V1E2Q96A05 226 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 TMEM120AQ9BXJ8 343 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 TCEAL2Q9H3H9 227 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 IPPKQ9H8X2 491 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 IMP3Q9NV31 184 aaKnown RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 DNAJC11Q9NVH1 559 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 DNAJC28Q9NX36 388 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 SPATA7Q9P0W8 599 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CIDEBQ9UHD4 219 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 LNPEPQ9UIQ6 1025 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 TDRKHQ9Y2W6 561 aaKnown RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 CFAP20Q9Y6A4 193 aaKnown RBP13.3□□□□□ -0.28
CCDC40-209ENST00000573474 COLEC10Q9Y6Z7 277 aa13.3□□□□□ -0.28
CCDC40-209ENST00000573474 A6NCN8 305 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 ZNF839A8K0R7 811 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 PRR5-ARHGAP8B1AHC4 643 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 OR7A17O14581 309 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 AZIN1O14977 448 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 CRCPO75575 148 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 MTHFD1P11586 935 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 NME1P15531 152 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 ITPKAP23677 461 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 NDUFS1P28331 727 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 CNR2P34972 360 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 DHPSP49366 369 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 CSNK1EP49674 416 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 PNLIPRP1P54315 467 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 NXPH1P58417 271 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 PRKG2Q13237 762 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 SRSF5Q13243 272 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 GRB7Q14451 532 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 ARHGAP19Q14CB8 494 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 TEAD4Q15561 434 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 ZNF528Q3MIS6 628 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 PLK5Q496M5 336 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 CAPN13Q6MZZ7 669 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 LAYNQ6UX15 382 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 MILR1Q7Z6M3 343 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 TAF8Q7Z7C8 310 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 THOC6Q86W42 341 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 HOMEZQ8IX15 550 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 SYTL1Q8IYJ3 562 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 RAB42Q8N4Z0 105 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 NELL1Q92832 810 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 PYCR2Q96C36 320 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 CAMK1GQ96NX5 476 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 NTMT1Q9BV86 223 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 STN1Q9H668 368 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 TNFRSF12AQ9NP84 129 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 SCHIP1Q9P0W5 487 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 TAAR2Q9P1P5 351 aa13.29□□□□□ -0.28
CCDC40-209ENST00000573474 APOBEC3BQ9UH17 382 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 APOBEC2Q9Y235 224 aaKnown RBP13.29□□□□□ -0.28
CCDC40-209ENST00000573474 SLC22A14Q9Y267 594 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms