RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PDE10AQ9Y233 779 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 CREG1O75629 220 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 IGSF6O95976 241 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 KRT6AP02538 564 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 KRT6BP04259 564 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 MATN1P21941 496 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 EEF1B2P24534 225 aaKnown RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 CCR7P32248 378 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 KRT6CP48668 564 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 CCL23P55773 120 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 CLDN8P56748 225 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 CDKL4Q5MAI5 379 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 RBM48Q5RL73 367 aaKnown RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 XAF1Q6GPH4 301 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 C8orf59Q8N0T1 100 aaPredicted RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 SDCCAG3Q96C92 435 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 HHIPL1Q96JK4 782 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 CPPED1Q9BRF8 314 aaPredicted RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 KCNH6Q9H252 994 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 FANCEQ9HB96 536 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 HPS4Q9NQG7 708 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 ZDHHC3Q9NYG2 299 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 TMEM9Q9P0T7 183 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 KLHL42Q9P2K6 505 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 INTS6Q9UL03 887 aaKnown RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 MAN2B2Q9Y2E5 1009 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 PCDHGA8Q9Y5G5 932 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 KIAA1671Q9BY89 1806 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 hCG_2014768A0A024R1R8 64 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 NOBOXO60393 691 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 ERN1O75460 977 aaKnown RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 SEC14L2O76054 403 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 HOXB9P17482 250 aaPredicted RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 SERPINA4P29622 427 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 CD70P32970 193 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 EPHB3P54753 998 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 RPS14P62263 151 aaKnown RBP22.24■■□□□ 1.15
VPS53-211ENST00000571805 BROXQ5VW32 411 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 CROCCP3Q8IVE0 287 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 DNAJB8Q8NHS0 232 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 ARL15Q9NXU5 204 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 INSL5Q9Y5Q6 135 aa22.24■■□□□ 1.15
VPS53-211ENST00000571805 MICAL3Q7RTP6 2002 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 FAM220BPB1ANY3 271 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 FOXD2O60548 495 aaPredicted RBP22.23■■□□□ 1.15
VPS53-211ENST00000571805 CD247P20963 164 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 PIGAP37287 484 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 MYBPC3Q14896 1274 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 R3HCC1LQ7Z5L2 792 aaKnown RBP22.23■■□□□ 1.15
VPS53-211ENST00000571805 TMEM179BQ7Z7N9 219 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 HOMEZQ8IX15 550 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 TCEAL8Q8IYN2 117 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 OR2AP1Q8NGE2 309 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 NETO1Q8TDF5 533 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 HDAC2Q92769 488 aaKnown RBP22.23■■□□□ 1.15
VPS53-211ENST00000571805 COL4A6Q14031 1691 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 KCNE1BA0A087WTH5 132 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 A0A096LPI6 279 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 ABCB7O75027 752 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 PTPN6P29350 595 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 PLEKHG6Q3KR16 790 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 ATP13A5Q4VNC0 1218 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 TTC23LQ6PF05 361 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 TPRG1Q6ZUI0 275 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 HSPBAP1Q96EW2 488 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 SCRN2Q96FV2 425 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 RBM4BQ9BQ04 359 aaKnown RBP22.23■■□□□ 1.15
VPS53-211ENST00000571805 RBM4Q9BWF3 364 aaKnown RBP22.23■■□□□ 1.15
VPS53-211ENST00000571805 ABCG8Q9H221 673 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 MAGIXQ9H6Y5 334 aa22.23■■□□□ 1.15
VPS53-211ENST00000571805 FAF1Q9UNN5 650 aaPredicted RBP22.23■■□□□ 1.15
VPS53-211ENST00000571805 IL7RP16871 459 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 RANBP1P43487 201 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 PTSQ03393 145 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 EPS8Q12929 822 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 LRRC66Q68CR7 880 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 RFLNAQ6ZTI6 216 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 BBS7Q8IWZ6 715 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 CHDHQ8NE62 594 aaPredicted RBP22.22■■□□□ 1.15
VPS53-211ENST00000571805 TBC1D15Q8TC07 691 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 SGCDQ92629 289 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 THAP11Q96EK4 314 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 INPP5KQ9BT40 448 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 KIAA1522Q9P206 1035 aaPredicted RBP22.22■■□□□ 1.15
VPS53-211ENST00000571805 GMEB1Q9Y692 573 aa22.22■■□□□ 1.15
VPS53-211ENST00000571805 GNGT2O14610 69 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 PPP1R8Q12972 351 aaKnown RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 SLC44A4Q53GD3 710 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 SPESP1Q6UW49 350 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 DEFB128Q7Z7B8 93 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 FIBINQ8TAL6 211 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 SELENOMQ8WWX9 145 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 AUTS2Q8WXX7 1259 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 LZICQ8WZA0 190 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 SNX19Q92543 992 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 COPS8Q99627 209 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 ADNPQ9H2P0 1102 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 PARVBQ9HBI1 364 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 MBD1Q9UIS9 605 aaPredicted RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 B3GALT4O96024 378 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms