RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 HAS2Q92819 552 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 DCUN1D1Q96GG9 259 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 PANX2Q96RD6 677 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 ZNF559Q9BR84 538 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 ENKD1Q9H0I2 346 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 FAM60AQ9NP50 221 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 IL26Q9NPH9 171 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 NSG1A0A0A6YYJ2 146 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 A0A1B0GX78 115 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 AURKAO14965 403 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 AKR1B10O60218 316 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 NDST3O95803 873 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 HPP00738 406 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 RALBP11234 206 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 TCF4P15884 667 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 ABOP16442 354 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 DNAJA1P31689 397 aaKnown RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 HMGCLP35914 325 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 GJC1P36383 396 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 NSG1P42857 185 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 SLC1A1P43005 524 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 RAB28P51157 221 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 IST1P53990 364 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 HADHBP55084 474 aaKnown RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 TMPRSS15P98073 1019 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 PRKG2Q13237 762 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 DSG2Q14126 1118 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 PAFAH1B3Q15102 231 aaKnown RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 CDSNQ15517 529 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 NKG7Q16617 165 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 LONRF1Q17RB8 773 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 TFDP3Q5H9I0 405 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 CES4AQ5XG92 561 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 TRIM73Q86UV7 250 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 SPPL2CQ8IUH8 684 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 MAP7D3Q8IWC1 876 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 TXLNBQ8N3L3 684 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 TAB3Q8N5C8 712 aaPredicted RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 SIRT6Q8N6T7 355 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 KCTD6Q8NC69 237 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 RNF214Q8ND24 703 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 OR52E1Q8NGJ3 308 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 FAM71BQ8TC56 605 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 ADAMTS18Q8TE60 1221 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 NANOS1Q8WY41 292 aaKnown RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 SDCCAG3Q96C92 435 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 RMDN2Q96LZ7 410 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 CRB3Q9BUF7 120 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 THAP2Q9H0W7 228 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 TRABDQ9H4I3 376 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 GSX1Q9H4S2 264 aaPredicted RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 TFB2MQ9H5Q4 396 aaKnown RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 XKR8Q9H6D3 395 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 NHEJ1Q9H9Q4 299 aaPredicted RBP10.64□□□□□ -0.71
VPS53-207ENST00000570510 IMPACTQ9P2X3 320 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 EDARQ9UNE0 448 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 PLCL2Q9UPR0 1127 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 MEMO1Q9Y316 297 aa10.64□□□□□ -0.71
VPS53-207ENST00000570510 PRAMEF2O60811 474 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 ZWINTO95229 277 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 PRAMEF1O95521 474 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 FDXRP22570 491 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 CXCR2P25025 360 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 CDC25BP30305 580 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 CARSP49589 748 aaKnown RBP10.63□□□□□ -0.71
VPS53-207ENST00000570510 OCA2Q04671 838 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 AP1B1Q10567 949 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 PDK2Q15119 407 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 KRTCAP3Q53RY4 240 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 LRRC38Q5VT99 294 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 NCBP2-AS2Q69YL0 99 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 CNSTQ6PJW8 725 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 TMTC1Q8IUR5 882 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 TMEM151BQ8IW70 566 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 FAM20CQ8IXL6 584 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 DNAAF3Q8N9W5 541 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 PHC3Q8NDX5 983 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 BRIX1Q8TDN6 353 aaKnown RBP10.63□□□□□ -0.71
VPS53-207ENST00000570510 TRIB3Q96RU7 358 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 FOXC2Q99958 501 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 HGH1Q9BTY7 390 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 MVB12BQ9H7P6 319 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 TEKT2Q9UIF3 430 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 ANAPC7Q9UJX3 599 aa10.63□□□□□ -0.71
VPS53-207ENST00000570510 CCDC88CQ9P219 2028 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 A0A0A6YYK5 440 aaPredicted RBP10.62□□□□□ -0.71
VPS53-207ENST00000570510 A0A0J9YY10 115 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 GPR39O43194 453 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 PROSCO94903 275 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 CD48P09326 243 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 PRR35P0CG20 571 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 FOSL1P15407 271 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 UGT2B7P16662 529 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 CYLC1P35663 651 aaPredicted RBP10.62□□□□□ -0.71
VPS53-207ENST00000570510 AP2B1P63010 937 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 FOLH1Q04609 750 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 LTBQ06643 244 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 MYBPHQ13203 477 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 ABHD17BQ5VST6 288 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 TXNRD3NBQ6F5E7 133 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms