RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 UBE2R2Q712K3 238 aaPredicted RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 SLC9B2Q86UD5 537 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 SLITRK4Q8IW52 837 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 RIBC1Q8N443 379 aaPredicted RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 NKAPQ8N5F7 415 aaKnown RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 ZNF480Q8WV37 535 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 KIAA1191Q96A73 305 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 TLCD1Q96CP7 247 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 CXorf40BQ96DE9 158 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 MTBPQ96DY7 904 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 PPM1MQ96MI6 270 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 FERD3LQ96RJ6 166 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 CDC6Q99741 560 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 NUDT22Q9BRQ3 303 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 TRIT1Q9H3H1 467 aaKnown RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 SYTL2Q9HCH5 934 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 PCMTD2Q9NV79 361 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 TMEM216Q9P0N5 145 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 PDP2Q9P2J9 529 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 NOVA2Q9UNW9 492 aaKnown RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 WASF3Q9UPY6 502 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 ACOT9Q9Y305 439 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 MN1Q10571 1320 aaPredicted RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 IQANK1A0A1B0GTG1 560 aa9□□□□□ -0.97
VPS35-211ENST00000569950 TLDC2A0PJX2 215 aa9□□□□□ -0.97
VPS35-211ENST00000569950 DCDC2BA2VCK2 349 aa9□□□□□ -0.97
VPS35-211ENST00000569950 E7ENX8 843 aa9□□□□□ -0.97
VPS35-211ENST00000569950 IFRD1O00458 451 aaPredicted RBP9□□□□□ -0.97
VPS35-211ENST00000569950 BTN3A1O00481 513 aa9□□□□□ -0.97
VPS35-211ENST00000569950 TYROBPO43914 113 aa9□□□□□ -0.97
VPS35-211ENST00000569950 OPA1O60313 960 aa9□□□□□ -0.97
VPS35-211ENST00000569950 C9P02748 559 aa9□□□□□ -0.97
VPS35-211ENST00000569950 MPOP05164 745 aa9□□□□□ -0.97
VPS35-211ENST00000569950 C8GP07360 202 aa9□□□□□ -0.97
VPS35-211ENST00000569950 FTH1P19P0C7X4 201 aa9□□□□□ -0.97
VPS35-211ENST00000569950 COL6A2P12110 1019 aa9□□□□□ -0.97
VPS35-211ENST00000569950 CEACAM1P13688 526 aa9□□□□□ -0.97
VPS35-211ENST00000569950 TFEBP19484 476 aa9□□□□□ -0.97
VPS35-211ENST00000569950 CAPZBP47756 277 aa9□□□□□ -0.97
VPS35-211ENST00000569950 RGS4P49798 205 aa9□□□□□ -0.97
VPS35-211ENST00000569950 GFERP55789 205 aa9□□□□□ -0.97
VPS35-211ENST00000569950 INSM1Q01101 510 aaPredicted RBP9□□□□□ -0.97
VPS35-211ENST00000569950 TAP2Q03519 686 aa9□□□□□ -0.97
VPS35-211ENST00000569950 KRT71Q3SY84 523 aa9□□□□□ -0.97
VPS35-211ENST00000569950 CEP85LQ5SZL2 805 aa9□□□□□ -0.97
VPS35-211ENST00000569950 LRRC8EQ6NSJ5 796 aa9□□□□□ -0.97
VPS35-211ENST00000569950 B3GNT8Q7Z7M8 397 aa9□□□□□ -0.97
VPS35-211ENST00000569950 EXOC3L1Q86VI1 746 aa9□□□□□ -0.97
VPS35-211ENST00000569950 RBM12BQ8IXT5 1001 aaKnown RBP9□□□□□ -0.97
VPS35-211ENST00000569950 KLHDC8AQ8IYD2 350 aa9□□□□□ -0.97
VPS35-211ENST00000569950 MYO1HQ8N1T3 1032 aa9□□□□□ -0.97
VPS35-211ENST00000569950 Q8N9G6 341 aaPredicted RBP9□□□□□ -0.97
VPS35-211ENST00000569950 BANPQ8N9N5 519 aa9□□□□□ -0.97
VPS35-211ENST00000569950 OR9A1PQ8NGU1 263 aa9□□□□□ -0.97
VPS35-211ENST00000569950 OR2L8Q8NGY9 312 aa9□□□□□ -0.97
VPS35-211ENST00000569950 ACMSDQ8TDX5 336 aa9□□□□□ -0.97
VPS35-211ENST00000569950 NAT6Q93015 286 aa9□□□□□ -0.97
VPS35-211ENST00000569950 RAD51AP1Q96B01 352 aa9□□□□□ -0.97
VPS35-211ENST00000569950 ARL8AQ96BM9 186 aa9□□□□□ -0.97
VPS35-211ENST00000569950 PGM2Q96G03 612 aa9□□□□□ -0.97
VPS35-211ENST00000569950 PHF12Q96QT6 1004 aa9□□□□□ -0.97
VPS35-211ENST00000569950 SH3GL2Q99962 352 aa9□□□□□ -0.97
VPS35-211ENST00000569950 CCDC77Q9BR77 488 aa9□□□□□ -0.97
VPS35-211ENST00000569950 TMEM79Q9BSE2 394 aa9□□□□□ -0.97
VPS35-211ENST00000569950 RTKNQ9BST9 563 aa9□□□□□ -0.97
VPS35-211ENST00000569950 RAB33BQ9H082 229 aa9□□□□□ -0.97
VPS35-211ENST00000569950 ABCG4Q9H172 646 aa9□□□□□ -0.97
VPS35-211ENST00000569950 VPS11Q9H270 941 aa9□□□□□ -0.97
VPS35-211ENST00000569950 ALG9Q9H6U8 611 aa9□□□□□ -0.97
VPS35-211ENST00000569950 SYNPO2LQ9H987 977 aa9□□□□□ -0.97
VPS35-211ENST00000569950 RDH14Q9HBH5 336 aa9□□□□□ -0.97
VPS35-211ENST00000569950 PARVBQ9HBI1 364 aa9□□□□□ -0.97
VPS35-211ENST00000569950 TMBIM4Q9HC24 238 aa9□□□□□ -0.97
VPS35-211ENST00000569950 MKS1Q9NXB0 559 aa9□□□□□ -0.97
VPS35-211ENST00000569950 NCKIPSDQ9NZQ3 722 aa9□□□□□ -0.97
VPS35-211ENST00000569950 SEMA5BQ9P283 1151 aa9□□□□□ -0.97
VPS35-211ENST00000569950 STOX2Q9P2F5 926 aaPredicted RBP9□□□□□ -0.97
VPS35-211ENST00000569950 EPHA6Q9UF33 1036 aa9□□□□□ -0.97
VPS35-211ENST00000569950 ATXN7L1Q9ULK2 861 aaPredicted RBP9□□□□□ -0.97
VPS35-211ENST00000569950 SH2B3Q9UQQ2 575 aa9□□□□□ -0.97
VPS35-211ENST00000569950 OARD1Q9Y530 152 aa9□□□□□ -0.97
VPS35-211ENST00000569950 PCDHGA1Q9Y5H4 931 aa9□□□□□ -0.97
VPS35-211ENST00000569950 HEBP2Q9Y5Z4 205 aa9□□□□□ -0.97
VPS35-211ENST00000569950 IKBKGQ9Y6K9 419 aa9□□□□□ -0.97
VPS35-211ENST00000569950 IGF2RP11717 2491 aa9□□□□□ -0.97
VPS35-211ENST00000569950 SEC16AO15027 2179 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 IGKV1-8A0A0C4DH67 115 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR5K3A6NET4 321 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 D6RAR5 112 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 TK2O00142 265 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 KIF1CO43896 1103 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 NRP2O60462 931 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 PRAMEF4O60810 478 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 KERAO60938 352 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 RFPL3O75679 317 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 UBXN7O94888 489 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 CATP04040 527 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 RPLP0P05388 317 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 CHRM5P08912 532 aaPredicted RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 ENO2P09104 434 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms