RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 SMAD4Q13485 552 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 AP5B1Q2VPB7 878 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 C6orf136Q5SQH8 315 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 NEK5Q6P3R8 708 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 C16orf89Q6UX73 402 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 ADAMTSL4Q6UY14 1074 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 FAM83HQ6ZRV2 1179 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 LRRC70Q7Z2Q7 622 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 LRRTM4Q86VH4 590 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 HPS6Q86YV9 775 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 C2orf73Q8N5S3 287 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 PHC3Q8NDX5 983 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 HMGCLL1Q8TB92 370 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 UBTD2Q8WUN7 234 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 HMGB4Q8WW32 186 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 SELENOMQ8WWX9 145 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 STMN2Q93045 179 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 CCDC138Q96M89 665 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 CDRT15Q96T59 188 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 PKP4Q99569 1192 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 NTMT1Q9BV86 223 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 PHF7Q9BWX1 381 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 MMADHCQ9H3L0 296 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 IL1RL2Q9HB29 575 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 PHPT1Q9NRX4 125 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 DNAJC11Q9NVH1 559 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 INTS7Q9NVH2 962 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 SLC23A2Q9UGH3 650 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 L3MBTL1Q9Y468 752 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 COL6A3P12111 3177 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 A0A088AWK7 358 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 MGAT4DA6NG13 374 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 SOX1O00570 391 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 PLRG1O43660 514 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 ACP5P13686 325 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 IDO1P14902 403 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 TCN1P20061 433 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 RPL38P63173 70 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 MRPS21P82921 87 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 IRF8Q02556 426 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 CHIT1Q13231 466 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 DDX39BQ13838 428 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 COL19A1Q14993 1142 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 VPS26BQ4G0F5 336 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 XKR7Q5GH72 579 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 XKR6Q5GH73 641 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 THEMIS2Q5TEJ8 643 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 TMEM92Q6UXU6 159 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 SFRP1Q8N474 314 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 OR2L2Q8NH16 312 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 HM13Q8TCT9 377 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 ATL1Q8WXF7 558 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 COX14Q96I36 57 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 MRGPRX1Q96LB2 322 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 SLC25A23Q9BV35 468 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 WDR41Q9HAD4 459 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 MRPL40Q9NQ50 206 aaKnown RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 ADA2Q9NZK5 511 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 STOX2Q9P2F5 926 aaPredicted RBP6.88□□□□□ -1.31
SMG1-215ENST00000568239 GPR34Q9UPC5 381 aa6.88□□□□□ -1.31
SMG1-215ENST00000568239 ANGPT2O15123 496 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 RGS14O43566 566 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 SH3BGRLO75368 114 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 SEC22BO75396 215 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 C1orf105O95561 183 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 KRT6AP02538 564 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 KRT6BP04259 564 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 EPORP19235 508 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 NDUFV2P19404 249 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 POU3F3P20264 500 aaPredicted RBP6.87□□□□□ -1.31
SMG1-215ENST00000568239 GPX3P22352 226 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 ACSL1P33121 698 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 GGT5P36269 586 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 KRT6CP48668 564 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 ATXN3P54252 364 aaPredicted RBP6.87□□□□□ -1.31
SMG1-215ENST00000568239 PFN3P60673 137 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 PPP2CBP62714 309 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 ERVK-8P63133 956 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 PPP2CAP67775 309 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 RIPK1Q13546 671 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 RFTN2Q52LD8 501 aaPredicted RBP6.87□□□□□ -1.31
SMG1-215ENST00000568239 CDKL4Q5MAI5 379 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 EOGTQ5NDL2 527 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 IL23RQ5VWK5 629 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 REP15Q6BDI9 236 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 TTC23LQ6PF05 361 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 RIPOR1Q6ZS17 1223 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 Q7L0L9 218 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 THOC6Q86W42 341 aaKnown RBP6.87□□□□□ -1.31
SMG1-215ENST00000568239 HORMAD1Q86X24 394 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 DNASE1L2Q92874 299 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 FBXL8Q96CD0 374 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 CCT7Q99832 543 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 C1QTNF7Q9BXJ2 289 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 CD248Q9HCU0 757 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 PLAGL1Q9UM63 463 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 POLR3HQ9Y535 204 aaPredicted RBP6.87□□□□□ -1.31
SMG1-215ENST00000568239 PCM1Q15154 2024 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 C17orf113A0A1B0GUU1 675 aa6.87□□□□□ -1.31
SMG1-215ENST00000568239 E7EQ34 232 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms