RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 IRF2BP2Q7Z5L9 587 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 SPPL2CQ8IUH8 684 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 KBTBD2Q8IY47 623 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 PRSS58Q8IYP2 241 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 CCDC110Q8TBZ0 833 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 CA5BP1Q8WTZ4 195 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.27□□□□□ -0.61
CLK3-222ENST00000568232 SDCCAG3Q96C92 435 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 OR2A14Q96R47 310 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 HGH1Q9BTY7 390 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 SLC26A1Q9H2B4 701 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 UBP1Q9NZI7 540 aa11.27□□□□□ -0.61
CLK3-222ENST00000568232 MRPS2Q9Y399 296 aaKnown RBP11.27□□□□□ -0.61
CLK3-222ENST00000568232 A0A1B0GX78 115 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 FAM227AF5H4B4 570 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 PMPCBO75439 489 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 USP1O94782 785 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 NDST3O95803 873 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 PDHA2P29803 388 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 CEBPEQ15744 281 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 SKOR2Q2VWA4 1001 aaPredicted RBP11.26□□□□□ -0.61
CLK3-222ENST00000568232 Q6ZPB1 254 aaPredicted RBP11.26□□□□□ -0.61
CLK3-222ENST00000568232 DNAAF3Q8N9W5 541 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 FLVCR1-AS1Q8TAF5 88 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 FAM71BQ8TC56 605 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 AGAP11Q8TF27 550 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 TADA1Q96BN2 335 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 CCM2Q9BSQ5 444 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 LIME1Q9H400 295 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 IL17CQ9P0M4 197 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 PLCL2Q9UPR0 1127 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 ICKQ9UPZ9 632 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 KLHL20Q9Y2M5 609 aa11.26□□□□□ -0.61
CLK3-222ENST00000568232 FBN1P35555 2871 aaKnown RBP11.26□□□□□ -0.61
CLK3-222ENST00000568232 CACNA1CQ13936 2221 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 ANKRD12Q6UB98 2062 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 VSTM2BA6NLU5 285 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 SLCO2B1O94956 709 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 PRAMEF1O95521 474 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 ONECUT2O95948 504 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 ACPPP15309 386 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 FERP16591 822 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 IGFBP2P18065 325 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 MCM3P25205 808 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 GJC1P36383 396 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 SSR1P43307 286 aaKnown RBP11.25□□□□□ -0.61
CLK3-222ENST00000568232 IFI35P80217 286 aaPredicted RBP11.25□□□□□ -0.61
CLK3-222ENST00000568232 KLC1Q07866 573 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 ITGA9Q13797 1035 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 BCL7AQ4VC05 210 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 ATG9BQ674R7 924 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 CCDC70Q6NSX1 233 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 HIBCHQ6NVY1 386 aaPredicted RBP11.25□□□□□ -0.61
CLK3-222ENST00000568232 SARM1Q6SZW1 724 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 UNC5AQ6ZN44 842 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 PRIMA1Q86XR5 153 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 CPNE8Q86YQ8 564 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 PQLC3Q8N755 202 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 ZNF398Q8TD17 642 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 DTX3LQ8TDB6 740 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 LINC00615Q96LM1 132 aaPredicted RBP11.25□□□□□ -0.61
CLK3-222ENST00000568232 GPR137Q96N19 417 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 CRB3Q9BUF7 120 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 CHRNA10Q9GZZ6 450 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 OR52A5Q9H2C5 316 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 EURLQ9NYK6 297 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 LUC7L2Q9Y383 392 aaKnown RBP11.25□□□□□ -0.61
CLK3-222ENST00000568232 SCINQ9Y6U3 715 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 MAU2Q9Y6X3 613 aa11.25□□□□□ -0.61
CLK3-222ENST00000568232 NSG1A0A0A6YYJ2 146 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 A0A0J9YY10 115 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 ADAM10O14672 748 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 MAP2K7O14733 419 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 DSCR3O14972 297 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 UQCRHP07919 91 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 CHRM5P08912 532 aaPredicted RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 PIM1P11309 404 aaPredicted RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 COX6A1P12074 109 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 MX2P20592 715 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 NSG1P42857 185 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 CHRNA4P43681 627 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 ST13P50502 369 aaKnown RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 HSF1Q00613 529 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 CACNG1Q06432 222 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 PPIDQ08752 370 aaKnown RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 BOP1Q14137 746 aaKnown RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 PIGHQ14442 188 aaPredicted RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 TFDP3Q5H9I0 405 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 PPP1R2P3Q6NXS1 205 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 DOLPP1Q86YN1 238 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 MCATQ8IVS2 390 aaKnown RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 SLC25A41Q8N5S1 370 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 SUN3Q8TAQ9 357 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 HM13Q8TCT9 377 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 THAP3Q8WTV1 239 aaPredicted RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 DLG3Q92796 817 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 VPS50Q96JG6 964 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 DMRTA2Q96SC8 542 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 ZNF559Q9BR84 538 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 SLC25A51Q9H1U9 297 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms