RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TAX1BP1Q86VP1 789 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 FAM20CQ8IXL6 584 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 SPATA6LQ8N4H0 392 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 PMEPA1Q969W9 287 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 FOPNLQ96NB1 174 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 PKP4Q99569 1192 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 UNKQ9C0B0 810 aaKnown RBP18.94■□□□□ 0.62
CLN3-225ENST00000566824 STRADBQ9C0K7 418 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 POMT2Q9UKY4 750 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 ACACBO00763 2458 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 ASPMQ8IZT6 3477 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 RASGRF2O14827 1237 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 PRAMEF10O60809 474 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 CAPNS1P04632 268 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 RPN2P04844 631 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 ITGA2BP08514 1039 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 ZNF37AP17032 561 aaPredicted RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 GCAP28676 217 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 SHMT2P34897 504 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 SPRP35270 261 aaPredicted RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 RAB28P51157 221 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 IL2P60568 153 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 CYP4F3Q08477 520 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 TRA2AQ13595 282 aaKnown RBP eCLIP18.93■□□□□ 0.62
CLN3-225ENST00000566824 FASTKQ14296 549 aaKnown RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 USP10Q14694 798 aaKnown RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 RTP5Q14D33 572 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 UAP1Q16222 522 aaPredicted RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 CACHD1Q5VU97 1274 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 KLHL35Q6PF15 583 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 UBE2R2Q712K3 238 aaPredicted RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 TRMT10CQ7L0Y3 403 aaKnown RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 WDR36Q8NI36 951 aaKnown RBP18.93■□□□□ 0.62
CLN3-225ENST00000566824 MDM1Q8TC05 714 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 ZDHHC12Q96GR4 267 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 OR2A14Q96R47 310 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 NRSN2Q9GZP1 204 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 KLHL25Q9H0H3 589 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 POLR1BQ9H9Y6 1135 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 ACTR10Q9NZ32 417 aa18.93■□□□□ 0.62
CLN3-225ENST00000566824 A0A087WUV0 522 aaPredicted RBP18.92■□□□□ 0.62
CLN3-225ENST00000566824 MYO1CO00159 1063 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 EIF3FO00303 357 aaPredicted RBP18.92■□□□□ 0.62
CLN3-225ENST00000566824 BRINP1O60477 761 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 RASSF9O75901 435 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 FGF3P11487 239 aaPredicted RBP18.92■□□□□ 0.62
CLN3-225ENST00000566824 PVRP15151 417 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 UGT2B7P16662 529 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 PRDX3P30048 256 aaKnown RBP18.92■□□□□ 0.62
CLN3-225ENST00000566824 CCNFP41002 786 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 RGS4P49798 205 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 POU4F1Q01851 419 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 SLC29A2Q14542 456 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 ZKSCAN8Q15776 578 aaPredicted RBP18.92■□□□□ 0.62
CLN3-225ENST00000566824 PHKG1Q16816 387 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 MROH9Q5TGP6 573 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 ARMC6Q6NXE6 501 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 MBOAT1Q6ZNC8 495 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 PRSS42Q7Z5A4 293 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 MYO1HQ8N1T3 1032 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 FBXO39Q8N4B4 442 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 OR9A1PQ8NGU1 263 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 OR2L8Q8NGY9 312 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 SLC44A1Q8WWI5 657 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 RAD51AP1Q96B01 352 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 GRAMD1AQ96CP6 724 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 PAFAH2Q99487 392 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 RRAGDQ9NQL2 400 aaPredicted RBP18.92■□□□□ 0.62
CLN3-225ENST00000566824 SEMA5BQ9P283 1151 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 PISDQ9UG56 409 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 PDE10AQ9Y233 779 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 APC2O95996 2303 aa18.92■□□□□ 0.62
CLN3-225ENST00000566824 WDFY3Q8IZQ1 3526 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 PIPSLA2A3N6 862 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 POC1B-GALNT4F8VUJ3 575 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 TMX2-CTNND1H3BSU7 103 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 CDC7O00311 574 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 PLD2O14939 933 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 HGSO14964 777 aaPredicted RBP18.91■□□□□ 0.62
CLN3-225ENST00000566824 CATP04040 527 aaKnown RBP18.91■□□□□ 0.62
CLN3-225ENST00000566824 ABHD2P08910 425 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 ANKRD34CP0C6C1 535 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 YBX1P67809 324 aaKnown RBP18.91■□□□□ 0.62
CLN3-225ENST00000566824 SH3BP2P78314 561 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 FOXK2Q01167 660 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 KCNAB1Q14722 419 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 BMPERQ8N8U9 685 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 DCAKDQ8WVC6 231 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 KLHL6Q8WZ60 621 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 UBXN4Q92575 508 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 RNF31Q96EP0 1072 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 ZNF768Q9H5H4 540 aaKnown RBP18.91■□□□□ 0.62
CLN3-225ENST00000566824 GPAMQ9HCL2 828 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 OR6C2Q9NZP2 312 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 AK5Q9Y6K8 562 aa18.91■□□□□ 0.62
CLN3-225ENST00000566824 MAP1BP46821 2468 aaKnown RBP18.9■□□□□ 0.62
CLN3-225ENST00000566824 A0A1W2PPV9 198 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 NPEPPSL1A6NEC2 478 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 TLCD2A6NGC4 264 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 SLC9B1P1A6NJY1 282 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms