RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 GUCA1BQ9UMX6 200 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 PADI2Q9Y2J8 665 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 ZKSCAN5Q9Y2L8 839 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 NBASA2RRP1 2371 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 SEC16AO15027 2179 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 CYSRT1A8MQ03 144 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 C9J4A7 227 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 AP3B1O00203 1094 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 HCRTR1O43613 425 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 OR2B3O76000 313 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 PKLRP30613 574 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 RPL22P35268 128 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 GCGRP47871 477 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 RAB28P51157 221 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 PRAMEP78395 509 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 CHAF1BQ13112 559 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 GRB7Q14451 532 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 RPS6KA1Q15418 735 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 TLDC1Q6P9B6 456 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 UNC5DQ6UXZ4 953 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 PRUNE1Q86TP1 453 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 ATCAYQ86WG3 371 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 MPP5Q8N3R9 675 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 CCDC89Q8N998 374 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 PPHLN1Q8NEY8 458 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 IP6K3Q96PC2 410 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 GBP5Q96PP8 586 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 SLC7A5P2Q9GIP4 190 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 SPRTNQ9H040 489 aaPredicted RBP16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 TREX1Q9NSU2 369 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 SRPK3Q9UPE1 567 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 TDRKHQ9Y2W6 561 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 ZNF451Q9Y4E5 1061 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 COL12A1Q99715 3063 aa16.6■□□□□ 0.25
VPS9D1-203ENST00000563798 PRMT5O14744 637 aaPredicted RBP16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 SORBS2O94875 1100 aaKnown RBP16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 RPN2P04844 631 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 APOA4P06727 396 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 CBSLP0DN79 551 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 AOAHP28039 575 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 CBSP35520 551 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 TTPAP49638 278 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 RRADP55042 308 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 MLLT10P55197 1068 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 HSPA14Q0VDF9 509 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 SNX1Q13596 522 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 FAM69BQ5VUD6 431 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 RAB43Q86YS6 212 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 VRK3Q8IV63 474 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 LINC01555Q8NAE3 123 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 LKAAEAR1Q8TD35 194 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 N4BP2L2Q92802 583 aaPredicted RBP16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 SLC22A18Q96BI1 424 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 P2RY12Q9H244 342 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 CHRAC1Q9NRG0 131 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 CATSPERZQ9NTU4 200 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 ANKMY1Q9P2S6 941 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 ANAPC5Q9UJX4 755 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 PLCL2Q9UPR0 1127 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 LRRK2Q5S007 2527 aa16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 SPENQ96T58 3664 aaKnown RBP16.59■□□□□ 0.25
VPS9D1-203ENST00000563798 MED13Q9UHV7 2174 aa16.58■□□□□ 0.25
VPS9D1-203ENST00000563798 GOLGA6L6A8MZA4 724 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 ISM1B1AKI9 464 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 ZSCAN9O15535 394 aaPredicted RBP16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 FKBP9O95302 570 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 ONECUT2O95948 504 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 ZSCAN5DPP0CG00 497 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 CD9P21926 228 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 RPS3P23396 243 aaKnown RBP eCLIP16.58■□□□□ 0.247e-7■■■■□ 25.3
VPS9D1-203ENST00000563798 NPY2RP49146 381 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 DCDP81605 110 aaKnown RBP16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 SSPNQ14714 243 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 MRPL14Q6P1L8 145 aaKnown RBP16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 LRRC6Q86X45 466 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 DCUN1D3Q8IWE4 304 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 SMAD5Q99717 465 aaKnown RBP16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 IL22Q9GZX6 179 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 MARCH4Q9P2E8 410 aaPredicted RBP16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 PLAGL1Q9UM63 463 aa16.58■□□□□ 0.24
VPS9D1-203ENST00000563798 PCSK5Q92824 1860 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 IQCF5A8MTL0 148 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 KPNA5O15131 536 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 CD3EAPO15446 510 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 S1PR4O95977 384 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 DEFB110Q30KQ9 67 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 NADK2Q4G0N4 442 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 ARMC3Q5W041 872 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 FAM26EQ8N5C1 309 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 GALNT11Q8NCW6 608 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 FDCSPQ8NFU4 85 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 OR2Y1Q8NGV0 311 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 OR2L8Q8NGY9 312 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 MAIP1Q8WWC4 291 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 NACC2Q96BF6 587 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 PANX3Q96QZ0 392 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 KIFC1Q9BW19 673 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 NUDT9Q9BW91 350 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 MRM3Q9HC36 420 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 EURLQ9NYK6 297 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms